Browse Element(s) Details


Os.2989.1.S1_at

Description gb:AK066824.1
DB_XREF= gi:32976842
TID=Os.2989.1
CNT=24
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2989 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative serinethreonine kinase (OSJNBa0056G17.11), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013075I07, full insert sequence.
FL= gb:AK104880.1 gb:AK066824.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4295011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42880OsAffx.7892.1.S1_at11/1110+22788430..22796397retrotransposon protein, putative, unclassified
LOC_Os10g42900Os.46613.1.S2_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_s_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42900Os.46613.1.S1_at11/1110+22799307..22802248POT family protein, expressed
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0000087biological_processM phase of mitotic cell cycle
GO:0007346biological_processregulation of progression through mitotic cell cycle
GO:0009826biological_processunidimensional cell growth
GO:0030154biological_processcell differentiation
GO:0042023biological_processDNA endoreduplication
GO:0005634cellular_componentnucleus
GO:0004693molecular_functioncyclin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2989.1.S1_at--661--1071Chr10:22819673..22819697 (25 bp)
AGGGAACGCAGCTCCTGGCAACCAG
LOC_Os10g42950
Os.2989.1.S1_at--1151--8211Chr10:22819657..22819681 (25 bp)
GGCAACCAGTCTGTGGTACCGAGAC
LOC_Os10g42950
Os.2989.1.S1_at--356--9971Chr10:22819641..22819665 (25 bp)
TACCGAGACCCATTCCGAGGCAAAT
LOC_Os10g42950
Os.2989.1.S1_at--645--2451Chr10:22819614..22819638 (25 bp)
AACAACCCATGGTCGGTATGTCGAG
LOC_Os10g42950
Os.2989.1.S1_at--1142--8611Chr10:22819587..22819611 (25 bp)
TGGGTGGTACAAACATGGCGGCCTT
LOC_Os10g42950
Os.2989.1.S1_at--519--4191Chr10:22819343..22819367 (25 bp)
CCCGGTTATCCTACTCAACAGAAGA
LOC_Os10g42950
Os.2989.1.S1_at--177--6771Chr10:22819272..22819296 (25 bp)
GTTACTTGTGAGCACGCTTAGCTTT
LOC_Os10g42950
Os.2989.1.S1_at--975--6671Chr10:22819240..22819264 (25 bp)
GTTGCTCCTAGTCGTACAGTGAGAA
LOC_Os10g42950
Os.2989.1.S1_at--227--7371Chr10:22819151..22819175 (25 bp)
GTGACTACGCAGACAGGGCCAGGTT
LOC_Os10g42950
Os.2989.1.S1_at--1028--5971Chr10:22819104..22819128 (25 bp)
GAGACAGGCATACCCAGCCAGAGTT
LOC_Os10g42950
Os.2989.1.S1_at--1127--5251Chr10:22819046..22819070 (25 bp)
GAATGAATTGGCATCGTACGATCTA
LOC_Os10g42950
Target Sequence 
AGGGAACGCAGCTCCTGGCAACCAGTCTGTGGTACCGAGACCCATTCCGAGGCAAATGCAACAACCCATGGTCGGTATGT
CGAGAATGGGTGGTACAAACATGGCGGCCTTTGGTGCAGCTCCGCAAGGAGGCATAGCTGGGATGAATCCTGGTAATATT
CCAATGCAGAGGGGCGCTGGAGCCCAATCTCATCCGCATCAGTTGAGAAGGAAAGCTGATCAAGGGATGGGGATGCAGAA
CCCCGGTTATCCTACTCAACAGAAGAGGCGNTTCTGACCGACTGAATTTGTAATTGTATATCTATTTGGTGTGTTACTTG
TGAGCACGCTTAGCTTTTGCGGTNGTTGCTCCTAGTCGTACAGTGAGAATTGTATCTGTTCTGTTGTAATTGNACGCCAT
CACAACCAACACCTCTACTAGTTAGTTACTAGAGTGACTACGCAGACAGGGCCAGGTTGCCGATGATGCCATCACCAATG
GAGACAGGCATACCCAGCCAGAGTTTCGCCAATACTCTNCCNCNTGAACCCAACCAATGAATGAATTGGCATCGTACGAT
CTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2989.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis