Browse Element(s) Details


Os.15132.1.S1_x_at

Description gb:BI810530
DB_XREF= gi:15857718
DB_XREF=J010H05
CLONE=J010H05
TID=Os.15132.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.15132 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g429708/11expressed protein
LOC_Os01g722003/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42910OsAffx.13097.1.S1_s_at4/1110+22802600..22812009transposon protein, putative, Mutator sub-class, expressed
LOC_Os10g42920OsAffx.6947.1.S1_at11/1110+22812227..22812651hypothetical protein
LOC_Os10g42930OsAffx.20120.1.S1_at10/1110+22813495..22814824hypothetical protein
LOC_Os10g42930Os.46738.1.S1_s_at1/1110+22813495..22814824hypothetical protein
LOC_Os10g42940Os.4758.1.S1_at10/1110+22816803..22818952ADP-ribosylation factor, putative, expressed
LOC_Os10g42950Os.2989.1.S1_at11/1110+22819042..22823531Protein kinase domain containing protein, expressed
LOC_Os10g42960Os.39043.1.S1_s_at9/1110+22827191..22829895SSS sodium solute transporter superfamily protein, expressed
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.15132.1.S1_x_at--143--7971NONE
GGATCTTGTGATGTTTTGTGTGCAT
NONE
Os.15132.1.S1_x_at--354--9171NONE
TGCCCAGATGTGAAAGTTTAGCGAA
NONE
Os.15132.1.S1_x_at--683--1252Chr10:22831485..22831509 (25 bp)
AGTTGGCGGAATTGTGAGCACTACC
LOC_Os10g42970
Os.15132.1.S1_x_at--906--10112Chr10:22831455..22831479 (25 bp)
TATGTCTGGCCTAGTTGCTACTTGC
LOC_Os10g42970
Os.15132.1.S1_x_at--912--4451Chr10:22831447..22831471 (25 bp)
GCCTAGTTGCTACTTGCGTCGAATT
LOC_Os10g42970
Os.15132.1.S1_x_at--563--2051Chr10:22831436..22831460 (25 bp)
ACTTGCGTCGAATTTCAGTTTGCTG
LOC_Os10g42970
Os.15132.1.S1_x_at--286--9651Chr10:22831422..22831446 (25 bp)
TCAGTTTGCTGAACATCGAGGAAGA
LOC_Os10g42970
Os.15132.1.S1_x_at--884--5412Chr10:22831369..22831393 (25 bp)
GAAGCGATTCAATTCCTTGATCTCA
LOC_Os10g42970
Os.15132.1.S1_x_at--146--10511Chr10:22831362..22831386 (25 bp)
TTCAATTCCTTGATCTCACAACCAT
LOC_Os10g42970
Os.15132.1.S1_x_at--1020--3731Chr10:22831348..22831372 (25 bp)
CTCACAACCATGATTTGCTGTTTCG
LOC_Os10g42970
Os.15132.1.S1_x_at--395--1731NONE
ACCATGATTTGCTGTTTCGAACACA
NONE
Target Sequence 
GGATCTTGTGATGTTTTGTGTGCATGAATGCCCAGATGTGAAAGTTTAGCGAAGANANCTGAGAGGNAGGTTCATAAANA
AGTTGGCGGAATTGTGAGCACTACCANACCCTATGTCTGGCCTAGTTGCTACTTGCGTCGAATTTCAGTTTGCTGAACAT
CGAGGAAGATGGTGATTCAGGGGTNTTGTTGGAGATGGAAGCGATTCAATTCCTTGATCTCACAACCATGATTTGCTGTT
TCGAACACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.15132.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis