Browse Element(s) Details


Os.5240.1.S1_at

Description gb:AB110173.1
DB_XREF= gi:32352143
TID=Os.5240.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.5240 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for ankyrin, complete cds, clone: 13YPB030.
PROD=ankyrin
FL= gb:AK071604.1 gb:AB110173.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4304011/11Ankyrin-2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5240.1.S1_at--613--951Chr10:22859187..22859211 (25 bp)
AGGAAAGGCTTCACTGCGTTGCACT
LOC_Os10g43040
Os.5240.1.S1_at--692--4631Chr10:22859202..22859226 (25 bp)
GCGTTGCACTTTGCTTCGCAGAACT
LOC_Os10g43040
Os.5240.1.S1_at--461--2551Chr10:22859223..22859247 (25 bp)
AACTCCCACCTGGAGCTTGTGAAGT
LOC_Os10g43040
Os.5240.1.S1_at--824--2311Chr10:22859259..22859283 (25 bp)
AAAGGTGCAGACATCGCCGCAAAGA
LOC_Os10g43040
Os.5240.1.S1_at--758--7111Chr10:22859293..22859317 (25 bp)
GTCAGACGGCTCTACATGTTGCAGA
LOC_Os10g43040
Os.5240.1.S1_at--810--6571Chr10:22859400..22859424 (25 bp)
GATTCTGTGTCAACGATTGCTGAGA
LOC_Os10g43040
Os.5240.1.S1_at--83--4771Chr10:22859514..22859538 (25 bp)
GCTGCACTGAGGTCACCGGAACTGA
LOC_Os10g43040
Os.5240.1.S1_at--1126--5251Chr10:22859627..22859651 (25 bp)
GAATGCAATTTGATGGCACCCTCTA
LOC_Os10g43040
Os.5240.1.S1_at--817--8211Chr10:22859641..22859665 (25 bp)
GGCACCCTCTACGTTTTGTTATATA
LOC_Os10g43040
Os.5240.1.S1_at--940--231Chr10:22859661..22859685 (25 bp)
ATATATCCTTTGTTCTCGTATGGCA
LOC_Os10g43040
Os.5240.1.S1_at--1038--8911Chr10:22859710..22859734 (25 bp)
TGAGCGTGATACTAACTGTGTTTCT
LOC_Os10g43040
Target Sequence 
AGGAAAGGCTTCACTGCGTTGCACTTTGCTTCGCAGAACTCCCACCTGGAGCTTGTGAAGTATTTAGTCAAGAAAGGTGC
AGACATCGCCGCAAAGACAAAAGGGGGTCAGACGGCTCTACATGTTGCAGAGAAGGATGATGTTCGTGATTTCCTGAAAG
AATGTGAGCAGTCATTGAAGAAGGGAGGTGAGCTTCCATCGGAGAAGAAGGATGATTCTGTGTCAACGATTGCTGAGAAG
CCTGACGATGACAAGTCCTCGGGTGAGGCTACAAAAGACGAAGATGAAGCGGGGTTTGGCGAGAAGAGGAAAAGCGATGG
CATTGCTGCTGCACTGAGGTCACCGGAACTGAAAAAAGCCAAAGTTTCACTTGGGCATCTAATAAGTGCAAATGACATGG
AGGAAGAGGAAGAAGCTGACTAGACTAATGTAGGACGCGAGAATGCAATTTGATGGCACCCTCTACGTTTTGTTATATAT
CCTTTGTTCTCGTATGGCAAGCTGGGATGTGGACAGAACTGTATGAGCGTGATACTAACTGTGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5240.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis