Browse Element(s) Details


Os.2978.1.S1_at

Description gb:AK104823.1
DB_XREF= gi:32990032
TID=Os.2978.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.2978 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Clp protease (OSJNBa0056G17.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-041-F03, full insert sequence.
FL= gb:AK065306.1 gb:AK104666.1 gb:AK104823.1 gb:AK104396.1 gb:AK104589.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4305010/11ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
GO:0006510biological_processATP-dependent proteolysis
GO:0005739cellular_componentmitochondrion
GO:0005759cellular_componentmitochondrial matrix
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0009840cellular_componentchloroplastic endopeptidase Clp complex
GO:0008462molecular_functionendopeptidase Clp activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.2978.1.S1_at--430--2991Chr10:22862025..22862049 (25 bp)
AATGTCATCCGGCTTATATCAGGTT
LOC_Os10g43050
Os.2978.1.S1_at--415--251Chr10:22862040..22862064 (25 bp)
ATATCAGGTTTCACAGGACGCACTC
LOC_Os10g43050
Os.2978.1.S1_at--458--5791Chr10:22862056..22862080 (25 bp)
GACGCACTCCGGAGCAGGTTGAGAA
LOC_Os10g43050
Os.2978.1.S1_at--558--911Chr10:22862116..22862140 (25 bp)
AGGCTGTTGATTACGGGCTCATCGA
LOC_Os10g43050
Os.2978.1.S1_at--887--8051Chr10:22862154..22862178 (25 bp)
GGAGACAGTATCATCCCACTTGAGC
LOC_Os10g43050
Os.2978.1.S1_at--1093--1431Chr10:22862236..22862260 (25 bp)
AGAAGTTCCTTACACCTGATGTCCC
LOC_Os10g43050
Os.2978.1.S1_at--912--9891Chr10:22862274..22862298 (25 bp)
TACTAGGTAATGAGCCTGCCTGCCT
LOC_Os10g43050
Os.2978.1.S1_at--644--8711Chr10:22862298..22862322 (25 bp)
TGTCGTTTGCATTTCGCACGGCAAG
LOC_Os10g43050
Os.2978.1.S1_at--650--5111Chr10:22862361..22862385 (25 bp)
GCACTAGTTGATTTTTCCTGTCACA
LOC_Os10g43050
Os.2978.1.S1_at--934--5851Chr10:22862522..22862547 (25 bp)
GACCAAGTGCGTGGCAGCTCATGTA
LOC_Os10g43050
Os.2978.1.S1_at--546--6951NONE
GTAGCTACGCCCAAGTGCTTAATTG
NONE
Target Sequence 
AATGTCATCCGGCTTATATCAGGTTTCACAGGACGCACTCCGGAGCAGGTTGAGAAAGACATTGATAGAGACAGATATAT
GGGTCCTCTTGAGGCTGTTGATTACGGGCTCATCGACAGTGTAATCGACGGAGACAGTATCATCCCACTTGAGCCTGTCC
CGGAGAGGGTGAAGCCGAAATACAACTACGAGGAACTGTACAAGGATCCACAGAAGTTCCTTACACCTGATGTCCCAGAT
GATGAGATATACTAGGTAATGAGCCTGCCTGCCTGTCGTTTGCATTTCGCACGGCAAGGGGGCTGCTTGCAATCAAAGAC
GATGCTCCTAGTCCTAGCACTAGTTGATTTTTCCTGTCACATGTTAACCAACTAGTGCCATATTACGATTGTTGAGCACG
CAGTTAGACTTATTGGTTGTGTTTGTCGTTGAAATTGCATGCGTTTGGTGTGCGAATGTGGATGGATTGANGAGGTGGTT
TGTGTACTGGGCATTTGACCAAGTGCGTGGCAGCTCATGTAGGCTGTAGCTACGCCCAAGTGCTTAATTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.2978.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis