Browse Element(s) Details


Os.51442.1.S1_at

Description gb:AK062821.1
DB_XREF= gi:32972839
TID=Os.51442.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51442 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-107-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F02, full insert sequence.
FL= gb:AK062821.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4306011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51442.1.S1_at--1154--3031Chr10:22865158..22865182 (25 bp)
AATCCCACAGGTGAGGTGACCTCTT
LOC_Os10g43060
Os.51442.1.S1_at--618--3451Chr10:22865128..22865152 (25 bp)
CAGTCTCCTCTCCTTAGTAGGATTA
LOC_Os10g43060
Os.51442.1.S1_at--991--9471Chr10:22865025..22865049 (25 bp)
TCTCCTTCAAATCAATTCCCAATTC
LOC_Os10g43060
Os.51442.1.S1_at--886--10531Chr10:22865003..22865027 (25 bp)
TTCGATTTAGGGTTGACGGATACGC
LOC_Os10g43060
Os.51442.1.S1_at--296--7951Chr10:22864986..22865010 (25 bp)
GGATACGCGAGCAGGGATAGCCCTC
LOC_Os10g43060
Os.51442.1.S1_at--34--4891Chr10:22864942..22864966 (25 bp)
GCTTTCTTGGTTTCCCTGTCGTAAT
LOC_Os10g43060
Os.51442.1.S1_at--105--10591Chr10:22864914..22864938 (25 bp)
TTCTCTCCAGCCAACGCGGTGAAAA
LOC_Os10g43060
Os.51442.1.S1_at--733--6931Chr10:22864853..22864877 (25 bp)
GTAGGTGCTGGTGCATCTGCTTTCA
LOC_Os10g43060
Os.51442.1.S1_at--58--7331Chr10:22864843..22864867 (25 bp)
GTGCATCTGCTTTCAGTTTCACCAC
LOC_Os10g43060
Os.51442.1.S1_at--1037--7911Chr10:22864812..22864836 (25 bp)
GGATTGGCCGCTAAACATATACTGA
LOC_Os10g43060
Os.51442.1.S1_at--1039--1951Chr10:22864792..22864816 (25 bp)
ACTGATATACACCTGTTTCCTGTCC
LOC_Os10g43060
Target Sequence 
AATCCCACAGGTGAGGTGACCTCTTCTCTCCAGTCTCCTCTCCTTAGTAGGATTAGGATCATTACGAATTTAGGATCGAG
AATATAGGATTATGAACCAGTAGTATTAGGATTATGTTTTCTTCGATTCTTTTTCTCCTTCAAATCAATTCCCAATTCGA
TTTAGGGTTGACGGATACGCGAGCAGGGATAGCCCTCCCGCCCGCAGAAAGATTGGGCTTTCTTGGTTTCCCTGTCGTAA
TCCCTTCTCTCCAGCCAACGCGGTGAAAATTTTGTTTCGGTGGGGGTGGGGTGGGTGGTTGCCGGGTAGGTGCTGGTGCA
TCTGCTTTCAGTTTCACCACCACCATGGATTGGCCGCTAAACATATACTGATATACACCTGTTTCCTGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51442.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis