Browse Element(s) Details


OsAffx.18612.1.S1_at

Description tigr:9638.m03952
TID=OsAffx.18612.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4303011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42970OsAffx.11826.1.S1_at11/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.15132.1.S1_x_at8/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_x_at2/1110+22830776..22832724expressed protein
LOC_Os10g42970Os.23711.1.S1_at1/1110+22830776..22832724expressed protein
LOC_Os10g42980Os.2987.3.S1_x_at11/1110+22835526..22837607retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18612.1.S1_at--801--7791Chr10:22856030..22856054 (25 bp)
GGTCTGCACGAGAGGCCCAACAGAG
LOC_Os10g43030
OsAffx.18612.1.S1_at--243--1871Chr10:22856023..22856047 (25 bp)
ACGAGAGGCCCAACAGAGTCGCCAG
LOC_Os10g43030
OsAffx.18612.1.S1_at--196--8411Chr10:22856017..22856041 (25 bp)
GGCCCAACAGAGTCGCCAGCGGCGA
LOC_Os10g43030
OsAffx.18612.1.S1_at--916--7551Chr10:22855981..22856005 (25 bp)
GGGCCGTGGCGTATGTGCGGTTGTC
LOC_Os10g43030
OsAffx.18612.1.S1_at--767--8711Chr10:22855960..22855984 (25 bp)
TGTCGTTGTCGTCGGACGCCATCTC
LOC_Os10g43030
OsAffx.18612.1.S1_at--58--6631Chr10:22855956..22855980 (25 bp)
GTTGTCGTCGGACGCCATCTCCTAC
LOC_Os10g43030
OsAffx.18612.1.S1_at--255--1931Chr10:22855916..22855940 (25 bp)
ACGGACATGCCGCTCTATGAGCCCC
LOC_Os10g43030
OsAffx.18612.1.S1_at--100--9171Chr10:22855764..22855788 (25 bp)
TGCGCGCGCATGTTCCACGCCATGT
LOC_Os10g43030
OsAffx.18612.1.S1_at--564--1651Chr10:22855558..22855742 (25 bp)
AGCGCCCCAGCGACACGAAGTGGGA
LOC_Os10g43030
OsAffx.18612.1.S1_at--229--3391Chr10:22855551..22855735 (25 bp)
CAGCGACACGAAGTGGGAGCTACGT
LOC_Os10g43030
OsAffx.18612.1.S1_at--200--4571Chr10:22855518..22855542 (25 bp)
GCGCGGCTACGCATCGGCGAGCTTC
LOC_Os10g43030
Target Sequence 
GGTCTGCACGAGAGGCCCAACAGAGTCGCCAGCGGCGAGAAGGAGGAGTGGGCCGTGGCGTATGTGCGGTTGTCGTTGTC
GTCGGACGCCATCTCCTACTCCTCCAGCATCTCCACGGACATGCCGCTCTATGAGCCCCCCGAGGTGTCGTTCGACGAGT
ACCTCCTCGACTGCGCGCGCATGTTCCACGCCATGTTCCCCGACGAGAGCAGGAGCCAGCGCCCCAGCGACACGAAGTGG
GAGCTACGTGGGCTGGAGCGCGGCTACGCATCGGCGAGCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis