Browse Element(s) Details


Os.46892.2.S1_at

Description gb:NM_197932.1
DB_XREF= gi:37537221
TID=Os.46892.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.46892 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) hypothetical protein, 5-partial (OSJNBb0013L12.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein, 5-partial (OSJNBb0013L12.1), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4307511/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46892.2.S1_at--1132--9832Chr04:7905556..7905580 (25 bp)
TAAAGTACATTCATTTTTCCTCCTG
NONE
Os.46892.2.S1_at--1146--2832Chr04:7905558..7905582 (25 bp)
AAGTACATTCATTTTTCCTCCTGAA
NONE
Os.46892.2.S1_at--824--7012Chr04:7905560..7905584 (25 bp)
GTACATTCATTTTTCCTCCTGAAAG
NONE
Os.46892.2.S1_at--582--2072Chr04:7905562..7905586 (25 bp)
ACATTCATTTTTCCTCCTGAAAGTG
NONE
Os.46892.2.S1_at--965--112Chr04:7905564..7905588 (25 bp)
ATTCATTTTTCCTCCTGAAAGTGAG
NONE
Os.46892.2.S1_at--538--9592Chr04:7905566..7905590 (25 bp)
TCATTTTTCCTCCTGAAAGTGAGCT
NONE
Os.46892.2.S1_at--771--152Chr04:7905568..7905592 (25 bp)
ATTTTTCCTCCTGAAAGTGAGCTTT
NONE
Os.46892.2.S1_at--341--3812Chr04:7905575..7905599 (25 bp)
CTCCTGAAAGTGAGCTTTTCCTTGG
NONE
Os.46892.2.S1_at--1160--3832Chr04:7905578..7905602 (25 bp)
CTGAAAGTGAGCTTTTCCTTGGTGA
NONE
Os.46892.2.S1_at--743--5572Chr04:7905580..7905604 (25 bp)
GAAAGTGAGCTTTTCCTTGGTGATT
NONE
Os.46892.2.S1_at--34--2332Chr04:7905581..7905604 (24 bp)
AAAGTGAGCTTTTCCTTGGTGATTT
NONE
Target Sequence 
TAAAGTACATTCATTTTTCCTCCTGAAAGTGAGCTTTTCCTTGGTGATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46892.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis