Browse Element(s) Details


Os.6581.1.S1_at

Description gb:AK072734.1
DB_XREF= gi:32982757
TID=Os.6581.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6581 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) unknown protein (OSJNBa0056G17.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023141G14, full insert sequence.
FL= gb:AK072734.1 gb:AK104136.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g430608/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g42999NANA10+22839762..22846039retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g43020Os.46995.1.S1_x_at1/1110+22850109..22852221retrotransposon protein, putative, unclassified
LOC_Os10g43030OsAffx.18612.1.S1_x_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43030OsAffx.18612.1.S1_at11/1110+22855467..22856111hypothetical protein
LOC_Os10g43040Os.5240.1.S1_at11/1110+22856728..22859861Ankyrin-2, putative, expressed
LOC_Os10g43050Os.2978.1.S1_at10/1110+22860459..22862600ATP-dependent Clp protease proteolytic subunit 3, putative, expressed
LOC_Os10g43060Os.51442.1.S1_at11/1110+22862780..22865397expressed protein
LOC_Os10g43060Os.6581.1.S1_at8/1110+22862780..22865397expressed protein
LOC_Os10g43075Os.14340.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.2.S1_x_at11/1110+22866052..22876353NA
LOC_Os10g43075Os.46892.1.S1_at11/1110+22866052..22876353NA
LOC_Os10g43075OsAffx.17372.1.S1_at1/1110+22866052..22876353NA

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6581.1.S1_at--721--111Chr10:22863231..22863255 (25 bp)
ATTCTCAGTGCAGTGGTTTGCCGCA
LOC_Os10g43060
Os.6581.1.S1_at--1089--4671Chr10:22863197..22863221 (25 bp)
GCGGTACCTTTCATAGGCATGCTCA
LOC_Os10g43060
Os.6581.1.S1_at--1102--931Chr10:22863173..22863197 (25 bp)
AGGAAGTCTGTGCTGATGCCAAAGA
LOC_Os10g43060
Os.6581.1.S1_at--661--3651Chr10:22863137..22863161 (25 bp)
CTTACCATAGCTGCCTCAATATTGG
LOC_Os10g43060
Os.6581.1.S1_at--1131--6371Chr10:22862978..22863002 (25 bp)
GATCCGCTTGCCCTCAGAGTTGAGA
LOC_Os10g43060
Os.6581.1.S1_at--336--3951Chr10:22862932..22862956 (25 bp)
CGGTTCTTGTTCCAACTTTCCATTG
LOC_Os10g43060
Os.6581.1.S1_at--916--8671Chr10:22862859..22862883 (25 bp)
TGTGTTGTGCCTTAGTCTTTATACT
LOC_Os10g43060
Os.6581.1.S1_at--512--10451Chr10:22862829..22862853 (25 bp)
TTACGTTGGATGCTTCTCCCATGAA
LOC_Os10g43060
Os.6581.1.S1_at--961--6291Chr10:22862704..22862728 (25 bp)
GATGATGTCCTTGAATTCGACCGAT
NONE
Os.6581.1.S1_at--1000--3151Chr10:22862691..22862715 (25 bp)
AATTCGACCGATTTGCATCTGCAAC
NONE
Os.6581.1.S1_at--1092--8411NONE
GGCCGATCTTGCAGTCGTTGTACAA
NONE
Target Sequence 
ATTCTCAGTGCAGTGGTTTGCCGCAGTCCATGCGGCGGTACCTTTCATAGGCATGCTCAGGAAGTCTGTGCTGATGCCAA
AGACAGCCATGGCGCTTACCATAGCTGCCTCAATATTGGGTCAGACAATTGGTTCGAGAGCTGAGCGTATCAGATTGAAG
AGGGCAGCAAAGGTTGCTGCTGGTAGCCAGGGTGATGCTAGCACCAGAATGANCCTGAAAACCGGGAGATACACTGATGA
TGTCCAGTTCTGGGATCCGCTTGCCCTCAGAGTTGAGAGTACCATAGGANCAGGAACTCCGGTTCTTGTTCCAACTTTCC
ATTGATGATGTGCCTTGGGTTTGTTTCTTCGGTCGATTATTGTTGTATTCATTGTGTTGTGCCTTAGTCTTTATACTAAA
TATTACGTTGGATGCTTCTCCCATGAATCTGGGGTCCAAATTTCAGTGTACNATNNNNTGCACGTGTACATTTCCGAAAA
CAAGTGTTACTAGTGCGCTAAGAAATACGCTTAGAGCTGAGAACTAAGATGATGTCCTTGAATTCGACCGATTTGCATCT
GCAACTGGCCGATCTTGCAGTCGTTGTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis