Browse Element(s) Details


Os.11745.1.S1_x_at

Description gb:AK102677.1
DB_XREF= gi:32987886
TID=Os.11745.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11745 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102H09, full insert sequence.
FL= gb:AK102677.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31750NANA11+18120155..18120889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31760OsAffx.13097.1.S1_s_at11/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31760Os.46613.1.S2_at4/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31770OsAffx.31254.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.2.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_x_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31780NANA11+18151276..18152838hypothetical protein
LOC_Os11g31790OsAffx.27607.2.S1_s_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31790OsAffx.27607.1.S1_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11745.1.S1_x_at--741--5251Chr11:18142459..18142483 (25 bp)
GAATCTGAGCCTGGAATTTCGATCC
LOC_Os11g31770
Os.11745.1.S1_x_at--899--3251Chr11:18142656..18142680 (25 bp)
CAACGTGCTGATCGAATTTCCAAAT
LOC_Os11g31770
Os.11745.1.S1_x_at--759--5411Chr11:18142703..18142820 (25 bp)
GAAGCCTTACATCAAGCTCTCTAAT
LOC_Os11g31770
Os.11745.1.S1_x_at--399--10231Chr11:18142998..18143022 (25 bp)
TATTGCTTCTTTGGGAACCTCAGTT
LOC_Os11g31770
Os.11745.1.S1_x_at--332--2031Chr11:18143024..18143125 (25 bp)
CATCCTTTAATCAGGGAGGGTCAAA
LOC_Os11g31770
Os.11745.1.S1_x_at--738--10551Chr11:18143313..18143337 (25 bp)
TTCTTGGACCATTTGCAACCTTATG
LOC_Os11g31770
Os.11745.1.S1_x_at--145--6731Chr11:18143380..18143404 (25 bp)
GTTCTCATTAGTTTGTACATTTACA
LOC_Os11g31770
Os.11745.1.S1_x_at--544--2111Chr11:18143402..18143426 (25 bp)
ACATGTGCTTTTGATTTCCAGTCTG
LOC_Os11g31770
Os.11745.1.S1_x_at--584--8832Chr11:18143413..18143437 (25 bp)
TGATTTCCAGTCTGTTTGTAACAAC
LOC_Os11g31770
Os.11745.1.S1_x_at--337--7051Chr11:18143430..18143454 (25 bp)
GTAACAACATTTGTGCTGTCTTAAA
LOC_Os11g31770
Os.11745.1.S1_x_at--803--2031Chr11:18143459..18143483 (25 bp)
ACTATACAATGTGCTTCTCTTTGCC
LOC_Os11g31770
Target Sequence 
GAATCTGAGCCTGGAATTTCGATCCAGGCATGGTGTTAGGAGCCATACAGATCATGTTGTTTGGATGATATCAAATTTGT
TACAACGGAAGATGCCTGGAGCATATTCAGAGCAACGTGCTGATCGAATTTCCAAATGGACTTGTGAACTTATTAAATCG
AAGCCTTACATCAAGCTCTCTAATGGTTGGAACAATGCTATGAATCGATTGAAGGAAAACTTTGTGATAAATGTAGATAC
TAAACCGGATGCAATAGATGCAGTTAATATCTTCTACAATTCAATATTGCTTCTTTGGGAACCTCAGTTTCATCCTTTAA
TCAGGGAGGGTCAAATGGATGTTCTTGTAGAGATAGCTCATCAGTTAGCTTTTGCAGAAGAGAGAAAAAACTACGAGCCA
TTGGAACCAGATTCATTAGATTTCTTGGACCATTTGCAACCTTATGCAAAATTATACATCTATAGAAAGAAGACAGAATC
TGGGGTATGTTCTCATTAGTTTGTACATTTACATGTGCTTTTGATTTCCAGTCTGTTTGTAACAACATTTGTGCTGTCTT
AAATTAAACTATACAATGTGCTTCTCTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11745.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis