Browse Element(s) Details


OsAffx.31254.1.S1_at

Description tigr:9639.m02890
TID=OsAffx.31254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3177011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31750NANA11+18120155..18120889retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g31760OsAffx.13097.1.S1_s_at11/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31760Os.46613.1.S2_at4/1111+18123721..18134096transposon protein, putative, Mutator sub-class
LOC_Os11g31770OsAffx.31254.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.2.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_x_at11/1111+18135091..18149501expressed protein
LOC_Os11g31770Os.11745.1.S1_at11/1111+18135091..18149501expressed protein
LOC_Os11g31780NANA11+18151276..18152838hypothetical protein
LOC_Os11g31790OsAffx.27607.2.S1_s_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31790OsAffx.27607.1.S1_at11/1111+18154576..18156702hypothetical protein
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31254.1.S1_at--170--10451Chr11:18146752..18146776 (25 bp)
TTAGTCCAAGTTAGTCCAGTGCATT
LOC_Os11g31770
OsAffx.31254.1.S1_at--945--6951Chr11:18146815..18146839 (25 bp)
GTAGCTCAATGATAATGCACCCAGT
LOC_Os11g31770
OsAffx.31254.1.S1_at--1064--6931Chr11:18146838..18146862 (25 bp)
GTAGAGGTGCTAATCTTGCCAACAT
LOC_Os11g31770
OsAffx.31254.1.S1_at--40--9591Chr11:18146851..18146875 (25 bp)
TCTTGCCAACATGACCACAGGTAAT
LOC_Os11g31770
OsAffx.31254.1.S1_at--1031--6491Chr11:18146968..18146992 (25 bp)
GATAGTTTTTCTGCATTCTCACTAT
LOC_Os11g31770
OsAffx.31254.1.S1_at--174--1451Chr11:18147011..18147035 (25 bp)
AGAAGTCCATTTGAGTCTCCCCTAT
LOC_Os11g31770
OsAffx.31254.1.S1_at--369--9311Chr11:18147028..18147052 (25 bp)
TCCCCTATTATTTCCTGAGCATTGT
LOC_Os11g31770
OsAffx.31254.1.S1_at--1048--5091Chr11:18147078..18147102 (25 bp)
GCACTTCAACCGCACTCAAATATGT
LOC_Os11g31770
OsAffx.31254.1.S1_at--1144--9811Chr11:18147102..18147126 (25 bp)
TAAACCAATCGTTCTTCGCCATTTG
LOC_Os11g31770
OsAffx.31254.1.S1_at--485--4171Chr11:18147118..18147142 (25 bp)
CGCCATTTGGTTGATCTAGCTTTGC
LOC_Os11g31770
OsAffx.31254.1.S1_at--1061--1551Chr11:18147135..18147159 (25 bp)
AGCTTTGCTAATTTTGCCACCTGAT
LOC_Os11g31770
Target Sequence 
TTAGTCCAAGTTAGTCCAGTGCATTGTAACAAGAAATTCCAACTTGCAATAAAAGATGAGCATGTAGCTCAATGATAATG
CACCCAGTAGAGGTGCTAATCTTGCCAACATGACCACAGGTAATCGACTGTACGAGTAAAATCTCTAATGGTACATGAAA
GATGACATGTTAGAACCATATTGGTGATTTGTGGACAATTGAAGTGATGACATTCTGATAGTTTTTCTGCATTCTCACTA
TTTATTTATTTATTTTGGAAGAAGTCCATTTGAGTCTCCCCTATTATTTCCTGAGCATTGTTTTCAACTGTCAATTATTA
TAACGGGCACTTCAACCGCACTCAAATATGTAAACCAATCGTTCTTCGCCATTTGGTTGATCTAGCTTTGCTAATTTTGC
CACCTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis