Browse Element(s) Details


OsAffx.31256.1.S1_at

Description tigr:9639.m02895
TID=OsAffx.31256.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3182010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31800OsAffx.31255.1.S1_at11/1111+18159982..18165052hypothetical protein
LOC_Os11g31810NANA11+18168653..18170997hypothetical protein
LOC_Os11g31820OsAffx.31256.1.S1_at10/1111+18189218..18200738hypothetical protein
LOC_Os11g31830Os.41695.15.S1_s_at11/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.3.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.2.S1_x_at10/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.5.S1_x_at9/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31830Os.41695.4.S1_x_at1/1111+18203675..18207787Transposable element protein, putative, MuDR
LOC_Os11g31840OsAffx.19542.3.S1_x_at3/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.21754.1.S1_x_at2/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31840OsAffx.9949.1.S1_at1/1111+18209111..18214777retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g31850OsAffx.19113.1.S1_at11/1111+18217074..18217733hypothetical protein
LOC_Os11g31860Os.54774.1.S1_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31860Os.54774.1.S1_x_at2/1111+18221305..18223528retrotransposon, putative, centromere-specific
LOC_Os11g31870NANA11+18225427..18226635retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31256.1.S1_at--419--651Chr11:18192369..18192393 (25 bp)
ATGCAGTGCCACAGAAATTCTCAGT
LOC_Os11g31820
OsAffx.31256.1.S1_at--1154--2231Chr11:18192355..18192379 (25 bp)
AAATTCTCAGTTTTGGACCATGATC
LOC_Os11g31820
OsAffx.31256.1.S1_at--155--10431Chr11:18192335..18192354 (20 bp)
TTATCCATTTATCTCTCAAGCGAAG
LOC_Os11g31820
OsAffx.31256.1.S1_at--1140--6891Chr11:18192194..18192218 (25 bp)
GTATGCACATACTCGAAGTGTCTAA
LOC_Os11g31820
OsAffx.31256.1.S1_at--69--6011NONE
GAGACCTCCTTGAAAATGAGTCGCT
NONE
OsAffx.31256.1.S1_at--575--6091Chr11:18190760..18190779 (20 bp)
GAGTCGCTTAAAGATCGTCTGATGA
LOC_Os11g31820
OsAffx.31256.1.S1_at--945--8971Chr11:18190554..18190578 (25 bp)
TGAAGTTTTCACAGGACATTCCCTT
LOC_Os11g31820
OsAffx.31256.1.S1_at--589--10651Chr11:18190531..18190555 (25 bp)
TTCCCAGGCGTTACACTATTCAAGG
LOC_Os11g31820
OsAffx.31256.1.S1_at--228--8831Chr11:18190233..18190252 (20 bp)
TGATTGCATATCTTCCACAGTTTTG
LOC_Os11g31820
OsAffx.31256.1.S1_at--745--10111Chr11:18190070..18190094 (25 bp)
TATGACATCGTCAGGGAACCCTTAA
LOC_Os11g31820
OsAffx.31256.1.S1_at--1124--2031Chr11:18189308..18189332 (25 bp)
ACTTTGCAGATCTTTGTGTAGGGAC
LOC_Os11g31820
Target Sequence 
ATGCAGTGCCACAGAAATTCTCAGTTTTGGACCATGATCTTATCCATTTATCTCTCAAGCGAAGAGCTCAGATTGTGGAT
ATGCATAATCAAGTATGCACATACTCGAAGTGTCTAAGAGACCTCCTTGAAAATGAGTCGCTTAAAGATCGTCTGATGAG
TTTGATGAGTGAGCTCAATGCTGAAGGTTTTTTTGACATCGACAGTAACTCTGTCAATTGGGACAATGAGTGTTTCTCAA
AGCTTGTAGAAAAATTCAAAAATGAAGTTTTCACAGGACATTCCCTTCCCAGGCGTTACACTATTCAAGGAATTATTGAT
TATTGGGCAATCTTACAAGAGAAGGATAACACTTGGCAAACCTTTGAAAAGGTTGTTACTGGAACTTCCACTAAATTGAT
TGCATATCTTCCACAGTTTTGGAGGGATACACGATATTATAAACATGAGTACTATGACATCGTCAGGGAACCCTTAAAAA
AGTCACTGATAAATGAATACTTTGCAGATCTTTGTGTAGGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31256.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis