Browse Element(s) Details


OsAffx.11541.1.S1_at

Description tigr:9629.m04862
TID=OsAffx.11541.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5028011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50200Os.5862.1.S1_at10/111+29174805..29176566UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os01g50220OsAffx.27607.1.S1_at3/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.27607.2.S1_s_at2/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50220OsAffx.31822.1.S1_at1/111+29181596..29186768retrotransposon protein, putative, LINE subclass
LOC_Os01g50230OsAffx.25106.1.S1_x_at10/111+29187404..29189814hypothetical protein
LOC_Os01g50240OsAffx.23734.1.S1_at11/111+29191368..29193354hypothetical protein
LOC_Os01g50259OsAffx.2289.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50259OsAffx.2290.1.S1_at11/111+29197164..29199402hypothetical protein
LOC_Os01g50280OsAffx.11541.1.S1_at11/111+29201386..29201893expressed protein
LOC_Os01g50290OsAffx.11542.1.S1_at11/111+29203238..29203955hypothetical protein
LOC_Os01g50300OsAffx.11543.1.S1_at11/111+29204996..29205514hypothetical protein
LOC_Os01g50310Os.37916.1.S1_at11/111+29208316..29209801expressed protein
LOC_Os01g50320Os.17836.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50320Os.54771.1.S1_at11/111+29212299..29217787Surp module family protein, expressed
LOC_Os01g50330OsAffx.11544.1.S1_at11/111+29218040..29219059Strictosidine synthase family protein, expressed
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11541.1.S1_at--280--4071Chr01:29201833..29201857 (25 bp)
CGAGGTGGTCGCCATTTACGATCAC
LOC_Os01g50280
OsAffx.11541.1.S1_at--179--9331Chr01:29201825..29201849 (25 bp)
TCGCCATTTACGATCACCTCGTCGA
LOC_Os01g50280
OsAffx.11541.1.S1_at--940--1271Chr01:29201735..29201759 (25 bp)
AGATCGCCGAGGTGGAGATTCAGCT
LOC_Os01g50280
OsAffx.11541.1.S1_at--1023--8031Chr01:29201722..29201746 (25 bp)
GGAGATTCAGCTCGGCTACGTCCTT
LOC_Os01g50280
OsAffx.11541.1.S1_at--700--1571Chr01:29201684..29201708 (25 bp)
AGCTCATGACCGAGCCCATGGACGA
LOC_Os01g50280
OsAffx.11541.1.S1_at--1085--6211Chr01:29201649..29201673 (25 bp)
GAGGCGCAGCGCGTCTTTCTCGTAG
LOC_Os01g50280
OsAffx.11541.1.S1_at--282--1651Chr01:29201642..29201666 (25 bp)
AGCGCGTCTTTCTCGTAGAGGCCTA
LOC_Os01g50280
OsAffx.11541.1.S1_at--220--6951Chr01:29201628..29201652 (25 bp)
GTAGAGGCCTACCACGATCTCAGGG
LOC_Os01g50280
OsAffx.11541.1.S1_at--832--9971Chr01:29201619..29201643 (25 bp)
TACCACGATCTCAGGGCGCGCGTCG
LOC_Os01g50280
OsAffx.11541.1.S1_at--1072--7511Chr01:29201606..29201630 (25 bp)
GGGCGCGCGTCGATTTCCTCCTGGA
LOC_Os01g50280
OsAffx.11541.1.S1_at--70--3351Chr01:29201416..29201440 (25 bp)
CACGTTCGAGACCTTCGGGATGATC
LOC_Os01g50280
Target Sequence 
CGAGGTGGTCGCCATTTACGATCACCTCGTCGACAACCCCGACGCCGCCAGGATCGTGCTCGACGCCGCGCGCTCCGACT
TCGCCCACAACGACGACGAGATCGCCGAGGTGGAGATTCAGCTCGGCTACGTCCTTCAGCGGGCGGGCGAGCTCATGACC
GAGCCCATGGACGAGGTGGAGCGGGAGGCGCAGCGCGTCTTTCTCGTAGAGGCCTACCACGATCTCAGGGCGCGCGTCGA
TTTCCTCCTGGAGCGCCGCAGGCAGCTGGACCAGGTCGTCAACCTGCTGCTCTTCATCCGGACCTACGCCATCATCAAGC
GCGCCTTGCGGCGCCTCCTCCCCGCCGCGGCCCTCGTGTTCGTGGCCGGAACCGCCGCCGTGGTCGTGTACGTCGAGTGG
AGGCGCGGCACGGTGCCCACGTTCGAGACCTTCGGGATGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11541.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis