Browse Element(s) Details


Os.5940.1.S1_at

Description gb:AK058518.1
DB_XREF= gi:32968536
TID=Os.5940.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5940 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NPK1-related protein kinase-like protein (P0454A11.7), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-016-H04, full insert sequence.
FL= gb:AK058518.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5037011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50340Os.18108.1.S1_at11/111+29219741..29224118hAT family dimerisation domain containing protein, expressed
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5940.1.S1_at--608--4211Chr01:29249322..29249346 (25 bp)
CCGCATTCTGGGAGTCGGAGACCGA
LOC_Os01g50370
Os.5940.1.S1_at--79--3432Chr01:29249373..29249397 (25 bp)
CAGAGAGCCTCTGCGATAGGATCAA
LOC_Os01g50370
Os.5940.1.S1_at--38--2691Chr01:29249493..29249517 (25 bp)
AAGCGGCCAGGGAATCGATTGATGT
LOC_Os01g50370
Os.5940.1.S1_at--79--3051Chr01:29249505..29249529 (25 bp)
AATCGATTGATGTGGCGCGTAGCGC
LOC_Os01g50370
Os.5940.1.S1_at--462--6971Chr01:29249523..29249547 (25 bp)
GTAGCGCGCCAAGCAAAGTGTCCAG
LOC_Os01g50370
Os.5940.1.S1_at--137--9211Chr01:29249559..29249583 (25 bp)
TGCCAGCTGCTGAAGTGGTGCTTGT
LOC_Os01g50370
Os.5940.1.S1_at--649--5411Chr01:29249609..29249633 (25 bp)
GAAGCGGACGCTTTCGATCAGTCAA
LOC_Os01g50370
Os.5940.1.S1_at--167--7731Chr01:29249636..29249660 (25 bp)
GGTGGCGATATCCAAGCCGCTGATC
LOC_Os01g50370
Os.5940.1.S1_at--1131--4731Chr01:29249654..29249678 (25 bp)
GCTGATCGTTCAATCGAGCGTCGGA
LOC_Os01g50370
Os.5940.1.S1_at--548--4011Chr01:29249672..29249696 (25 bp)
CGTCGGAATAAAGTCTGCGCTGGTT
LOC_Os01g50370
Os.5940.1.S1_at--811--4571Chr01:29249688..29249712 (25 bp)
GCGCTGGTTCAGACAATGATGTACT
LOC_Os01g50370
Target Sequence 
CCGCATTCTGGGAGTCGGAGACCGACGACGAGGAGGAGGTCGACGAGATAACAGAGAGCCTCTGCGATAGGATCAAGTCA
NTGGCGTGCCCTGTTTCGGCCTTGCCGGATTGGGACTCCGACGAAGGCTGGATCGATCTGCTCGGCGAGCAGTGCGAGGC
TTGCGATTCGGAAGCGGCCAGGGAATCGATTGATGTGGCGCGTAGCGCGCCAAGCAAAGTGTCCAGCGCGGCGACGGTGC
CAGCTGCTGAAGTGGTGCTTGTCGGCGGCGGCTGCTGTCCAAGCAATGAAGCGGACGCTTTCGATCAGTCAATTGGTGGC
GATATCCAAGCCGCTGATCGTTCAATCGAGCGTCGGAATAAAGTCTGCGCTGGTTCAGACAATGATGTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5940.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis