Browse Element(s) Details


Os.32366.1.S1_at

Description gb:AK105196.1
DB_XREF= gi:32990405
TID=Os.32366.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.32366 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NPK1-related protein kinase-like protein (P0454A11.12), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-107-F03, full insert sequence.
FL= gb:AK105196.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5042011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed
LOC_Os01g50450Os.11717.1.S1_a_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.2.S1_at11/111+29297479..29301306expressed protein
LOC_Os01g50450Os.11717.1.S1_at11/111+29297479..29301306expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.32366.1.S1_at--371--8391Chr01:29274153..29274177 (25 bp)
GGCGAAGAATTTCCTATCCAGATGC
LOC_Os01g50420
Os.32366.1.S1_at--396--7971Chr01:29273869..29273893 (25 bp)
GGATCGACTTGCAAAGCGACCCATC
LOC_Os01g50420
Os.32366.1.S1_at--486--2671Chr01:29273856..29273880 (25 bp)
AAGCGACCCATCTGAAGTTTCGGAA
LOC_Os01g50420
Os.32366.1.S1_at--378--11Chr01:29273841..29273865 (25 bp)
AGTTTCGGAAACACCGGCGCCCATG
LOC_Os01g50420
Os.32366.1.S1_at--1120--7731Chr01:29273817..29273841 (25 bp)
GGTGGTGACTACTGCAGATTTCGGT
LOC_Os01g50420
Os.32366.1.S1_at--243--3851Chr01:29273806..29273830 (25 bp)
CTGCAGATTTCGGTCTTTGGTGGGA
LOC_Os01g50420
Os.32366.1.S1_at--179--6411Chr01:29273759..29273783 (25 bp)
GATCTCCATTTCGTTGACGTGGACG
LOC_Os01g50420
Os.32366.1.S1_at--653--6231Chr01:29273732..29273756 (25 bp)
GATGGCTATGTTACGCGAACTGTAC
LOC_Os01g50420
Os.32366.1.S1_at--280--7411Chr01:29273656..29273680 (25 bp)
GTGATATGCCGTTGTGCCCGGTTGA
LOC_Os01g50420
Os.32366.1.S1_at--1032--71Chr01:29273632..29273656 (25 bp)
ATTGCCACCGGAGCGACACTGTAAA
LOC_Os01g50420
Os.32366.1.S1_at--389--10571Chr01:29273606..29273630 (25 bp)
TTCGGTTGTCATTGTAACGGGAACA
LOC_Os01g50420
Target Sequence 
GGCGAAGAATTTCCTATCCAGATGCTTCACAAGGAACCCAAGCGACCGCCCCACTGCCGCGCAGCTACTGGAGCACCCAT
TTCTCGCATCCGCCTCCAGCGACATCGACGAAACGGCGCCGAAGCACGGCTGGGTGTCCCCCAAGAGCACGCTGAACGCC
GAATGCTGGGAATCTGATGAAGACGACGAAGTAGAAGAAGGCATGTCACAGAGCGCAACCAAGAGGATCAGCGCATTGGC
GATCACCTGCTCGGCGTTGCCGGACTGGGACTCCGAGGATGGCTGGATCGACTTGCAAAGCGACCCATCTGAAGTTTCGG
AAACACCGGCGCCCATGGTGGTGACTACTGCAGATTTCGGTCTTTGGTGGGAGGAAGCATTGGACGCGGAGATTGATCTC
CATTTCGTTGACGTGGACGGCGATGGCTATGTTACGCGAACTGTACNNGNNCNTNNTNNNNNNGANNNCNNNNGNCNNCN
NNGNNTNNNNNNNCGCGGTGATATGCCGTTGTGCCCGGTTGATTGCCACCGGAGCGACACTGTAAAATTCGGTTGTCATT
GTAACGGGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.32366.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis