Browse Element(s) Details


Os.27170.1.S1_at

Description gb:AK107168.1
DB_XREF= gi:32992377
TID=Os.27170.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.27170 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) NPK1-related protein kinase-like protein (P0454A11.10), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-124-F11, full insert sequence.
FL= gb:AK107168.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5040011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed
LOC_Os01g50430OsAffx.21482.1.S1_at8/111+29279029..29280651hypothetical protein
LOC_Os01g50440Os.20335.1.S1_at11/111+29282530..29283860AWPM-19-like membrane family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.27170.1.S1_at--296--9591Chr01:29261501..29261525 (25 bp)
TCTTGGCCCGCTGCTTCGCGAGAAA
LOC_Os01g50400
Os.27170.1.S1_at--52--1431Chr01:29261521..29261545 (25 bp)
AGAAACCCACGCGAGCGGTGGACAT
LOC_Os01g50400
Os.27170.1.S1_at--566--8531Chr01:29261539..29261563 (25 bp)
TGGACATCGTCGCAGCTCCTGGAGC
LOC_Os01g50400
Os.27170.1.S1_at--458--5851Chr01:29261697..29261721 (25 bp)
GAGCCCCGCCGAGAGGATCAAAGCA
LOC_Os01g50400
Os.27170.1.S1_at--850--7951Chr01:29261711..29261735 (25 bp)
GGATCAAAGCATTGGCTTGCCCCTG
LOC_Os01g50400
Os.27170.1.S1_at--1061--7571Chr01:29261766..29261790 (25 bp)
GGGCTGGATCCAAGTGCTCAACGAG
LOC_Os01g50400
Os.27170.1.S1_at--610--9091Chr01:29261780..29261804 (25 bp)
TGCTCAACGAGTCCAGCGAAGCTTG
LOC_Os01g50400
Os.27170.1.S1_at--330--5391Chr01:29261797..29261821 (25 bp)
GAAGCTTGCGACACGGCAGTGGCCA
LOC_Os01g50400
Os.27170.1.S1_at--851--5511Chr01:29261866..29261890 (25 bp)
GAAACGATCAACGAATCTTCCGGTG
LOC_Os01g50400
Os.27170.1.S1_at--405--5251Chr01:29261878..29261902 (25 bp)
GAATCTTCCGGTGGCGATGCAGAGT
LOC_Os01g50400
Os.27170.1.S1_at--337--4631Chr01:29261891..29261915 (25 bp)
GCGATGCAGAGTGTGTTGATCCCGA
LOC_Os01g50400
Target Sequence 
TCTTGGCCCGCTGCTTCGCGAGAAACCCACGCGAGCGGTGGACATCGTCGCAGCTCCTGGAGCACCCGTTCCTGGCATCG
GCAGGCTGCAGCGTGAAAACAGGGGAGGCGGCGCCCCAATGGGTGTCCCCCAAGAGCACGCTGGATGTGGCGTTNTGGGA
GTCGGACACGGACGACGAGGAGGACGACATGCCAGCGAGCCCCGCCGAGAGGATCAAAGCATTGGCTTGCCCCTGCTCGN
CCTTGCCGGATTGGGACTCCGACGAGGGCTGGATCCAAGTGCTCAACGAGTCCAGCGAAGCTTGCGACACGGCAGTGGCC
AAGGTGGAGGCCGAAGGGAAGGGGCGCGTTCTGATCGAAGCGTTGGAAACGATCAACGAATCTTCCGGTGGCGATGCAGA
GTGTGTTGATCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.27170.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis