Browse Element(s) Details


OsAffx.21483.1.S1_at

Description gb:NM_192192.1
DB_XREF= gi:34911467
GEN=P0454A11.8
TID=OsAffx.21483.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0454A11.8 (P0454A11.8), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g503804/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g50350Os.11906.1.S1_at11/111+29237064..29237915expressed protein
LOC_Os01g50360OsAffx.24947.2.S1_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50360OsAffx.24947.2.S1_x_at11/111+29240222..29242749NAC domain containing protein, expressed
LOC_Os01g50370Os.5940.1.S1_at11/111+29248345..29249932Protein kinase domain containing protein, expressed
LOC_Os01g50380OsAffx.21483.1.S1_at4/111+29251268..29251702hypothetical protein
LOC_Os01g50389NANA1+29257921..29258727NA
LOC_Os01g50400Os.27170.1.S1_at11/111+29260692..29262057Protein kinase domain containing protein, expressed
LOC_Os01g50410Os.5044.1.S1_at11/111+29265818..29267774Protein kinase domain containing protein, expressed
LOC_Os01g50420Os.32366.1.S1_at11/111+29272075..29274892Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21483.1.S1_at--415--1231Chr01:29251408..29251432 (25 bp)
AGTTCGTCCAAATCACCGGTCGTGC
LOC_Os01g50380
OsAffx.21483.1.S1_at--638--6891Chr01:29251377..29251401 (25 bp)
GTATAGCTCATTTTGGTGCCAGCAA
LOC_Os01g50380
OsAffx.21483.1.S1_at--99--7291Chr01:29251362..29251386 (25 bp)
GTGCCAGCAATGCAGGCTTTGACAT
LOC_Os01g50380
OsAffx.21483.1.S1_at--791--8031Chr01:29251316..29251340 (25 bp)
GGAGTTCTTGCACACTTCCAGACAT
LOC_Os01g50380
OsAffx.21483.1.S1_at--698--8111Chr01:29251076..29251100 (25 bp)
GGACGTATCTAGAACCAGTATCTCT
NONE
OsAffx.21483.1.S1_at--106--3451Chr01:29251061..29251085 (25 bp)
CAGTATCTCTCAAGTGTACGCTCTC
NONE
OsAffx.21483.1.S1_at--974--5331Chr01:29250968..29250992 (25 bp)
GAACCGAAAGCCGTGGACTCTTCCG
NONE
OsAffx.21483.1.S1_at--1067--8231Chr01:29250942..29250966 (25 bp)
GGCACGAGTTGGCAACCGTACCGTA
NONE
OsAffx.21483.1.S1_at--758--171Chr01:29250806..29250830 (25 bp)
ATTTTTACACGCTACACCTGGTACA
NONE
OsAffx.21483.1.S1_at--40--9851Chr01:29250794..29250818 (25 bp)
TACACCTGGTACACGGCACGATAGA
NONE
OsAffx.21483.1.S1_at--778--6491Chr01:29250775..29250799 (25 bp)
GATAGATGCGTGCTCACCGGCCATG
NONE
Target Sequence 
AGTTCGTCCAAATCACCGGTCGTGCTACCCGGTATAGCTCATTTTGGTGCCAGCAATGCAGGCTTTGACATTGAGCTGAC
CATAAGAGACTTGGAGTTCTTGCACACTTCCAGACATCCTCTAGATGCAGAGATTACATGTCCACNNGNNANNANNNNCN
NNNANGTGACCAAACTAAATCTTCTGGACGTATCTAGAACCAGTATCTCTCAAGTGTACGCTCTCCCAAACCGAGCTGAC
TCGAAAGCAACAGAAGGCACAAAGTGGCAAGAAGTCGGCCACCCGGGAGAGGCGAACCGAAAGCCGTGGACTCTTCCGCG
GCACGAGTTGGCAACCGTACCGTACGCCCCAAATGCCCTTTCCCCCGTGGACTCCATCCAGAGCTCTCGCGTCTTCCTCC
TCATCCCCTGTGGCCCAATCCGATACGCGGCCTTCGTGCCCCCACCACGCGCAAAATTTTTACACGCTACACCTGGTACA
CGGCACGATAGATGCGTGCTCACCGGCCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis