Browse Element(s) Details


OsAffx.10529.1.S1_at

Description gb:NM_184573.1
DB_XREF= gi:34896235
GEN=P0676G08.27
TID=OsAffx.10529.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0676G08.27 (P0676G08.27), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g2909011/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g29050OsAffx.15648.1.S1_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29050OsAffx.22452.1.S1_x_at1/111+16587107..16593858hypothetical protein
LOC_Os01g29060Os.48015.1.A1_x_at1/111+16594371..16595182retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_s_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.3.S1_x_at11/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29070Os.24831.1.S1_x_at4/111+16600740..16603480retrotransposon protein, putative, unclassified
LOC_Os01g29080OsAffx.10530.1.S1_at11/111+16610459..16611378retrotransposon protein, putative, unclassified
LOC_Os01g29090OsAffx.10529.1.S1_at11/111+16612056..16612451retrotransposon protein, putative, unclassified
LOC_Os01g29100OsAffx.23442.1.S1_at11/111+16612788..16615501retrotransposon protein, putative, unclassified
LOC_Os01g29110NANA1+16633378..16636648retrotransposon, putative, centromere-specific

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10529.1.S1_at--1135--3911Chr01:16612103..16612127 (25 bp)
CGGCCAAGTCGAGCATGCCAATGCT
LOC_Os01g29090
OsAffx.10529.1.S1_at--212--4991Chr01:16612115..16612139 (25 bp)
GCATGCCAATGCTGAGATCGTCAAA
LOC_Os01g29090
OsAffx.10529.1.S1_at--684--4751Chr01:16612125..16612149 (25 bp)
GCTGAGATCGTCAAAGGCCTCAAGA
LOC_Os01g29090
OsAffx.10529.1.S1_at--1151--3031Chr01:16612221..16612245 (25 bp)
AATCGGACCACTCCGAGTCACGCAA
LOC_Os01g29090
OsAffx.10529.1.S1_at--90--7111Chr01:16612237..16612261 (25 bp)
GTCACGCAACGGGAGAAACACCCTT
LOC_Os01g29090
OsAffx.10529.1.S1_at--750--10631Chr01:16612291..16612315 (25 bp)
TTCCCTCAGAGCTCTCCTTGGGTTC
LOC_Os01g29090
OsAffx.10529.1.S1_at--292--7891Chr01:16612311..16612335 (25 bp)
GGTTCGCCCCGTGTTGCATTGTATA
LOC_Os01g29090
OsAffx.10529.1.S1_at--1088--6651Chr01:16612323..16612347 (25 bp)
GTTGCATTGTATAACGAGGCGAACC
LOC_Os01g29090
OsAffx.10529.1.S1_at--672--6211Chr01:16612338..16612362 (25 bp)
GAGGCGAACCAGGACGAGCTCCGAC
LOC_Os01g29090
OsAffx.10529.1.S1_at--693--1571Chr01:16612354..16612378 (25 bp)
AGCTCCGACGGGATGACCTCGACTA
LOC_Os01g29090
OsAffx.10529.1.S1_at--899--7651Chr01:16612363..16612387 (25 bp)
GGGATGACCTCGACTATCTAGAAGA
LOC_Os01g29090
Target Sequence 
CGGCCAAGTCGAGCATGCCAATGCTGAGATCGTCAAAGGCCTCAAGACCAGGACGTACAACGTCCTCAAGAAGCATGGGG
ATTCTTGGCTTGAGGAACTGCCCGCAGTGCTGTGGGCCAATCGGACCACTCCGAGTCACGCAACGGGAGAAACACCCTTC
TTCCTGGTGTACGGCGCCGAGGTGGTCCTTCCCTCAGAGCTCTCCTTGGGTTCGCCCCGTGTTGCATTGTATAACGAGGC
GAACCAGGACGAGCTCCGACGGGATGACCTCGACTATCTAGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10529.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis