Browse Element(s) Details


OsAffx.12189.2.S1_at

Description tigr:9634.m02703
TID=OsAffx.12189.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2830011/11Zinc knuckle family protein, expressed
LOC_Os11g256401/11hypothetical protein
LOC_Os02g253101/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein
LOC_Os06g28260OsAffx.15643.1.S1_at10/116+16057400..16059557hypothetical protein
LOC_Os06g28270OsAffx.27847.1.S1_at11/116+16061895..16063707hypothetical protein
LOC_Os06g28270OsAffx.8558.1.S1_at3/116+16061895..16063707hypothetical protein
LOC_Os06g28280OsAffx.18932.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28280Os.53142.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28290NANA6+16068092..16068775hypothetical protein
LOC_Os06g28300OsAffx.12189.2.S1_at11/116+16069800..16071707Zinc knuckle family protein, expressed
LOC_Os06g28310NANA6+16075347..16084871retrotransposon protein, putative, unclassified
LOC_Os06g28320NANA6+16090332..16091044retrotransposon, putative, centromere-specific
LOC_Os06g28330OsAffx.21085.1.S1_at7/116+16093763..16098127retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12189.2.S1_at--640--191Chr06:16070299..16070323 (25 bp)
ATTTCCCACTAGATTTTGTCGATCA
LOC_Os06g28300
OsAffx.12189.2.S1_at--85--3071Chr06:16070264..16070288 (25 bp)
AATCTAGCAGTAGCTTCTTTTGGAC
LOC_Os06g28300
OsAffx.12189.2.S1_at--299--4892Chr06:16070252..16070276 (25 bp)
GCTTCTTTTGGACAACTTTCTTTCT
LOC_Os06g28300
OsAffx.12189.2.S1_at--426--10391Chr06:16070247..16070271 (25 bp)
TTTTGGACAACTTTCTTTCTGGCTT
LOC_Os06g28300
OsAffx.12189.2.S1_at--1047--8131Chr06:16070243..16070267 (25 bp)
GGACAACTTTCTTTCTGGCTTGATA
LOC_Os06g28300
OsAffx.12189.2.S1_at--323--10311Chr06:16070236..16070260 (25 bp)
TTTCTTTCTGGCTTGATAGGGACCA
LOC_Os06g28300
OsAffx.12189.2.S1_at--266--10031Chr06:16070178..16070202 (25 bp)
TAGAGATCTTGACTCGGTCCCCCGG
LOC_Os06g28300
OsAffx.12189.2.S1_at--1055--4171Chr06:16070159..16070183 (25 bp)
CCCCGGAAAATAGTGTTGCAGGATC
LOC_Os06g28300
OsAffx.12189.2.S1_at--1087--3092Chr11:14122675..14122698 (24 bp)
AATAGTGTTGCAGGATCCTTTGGGT
LOC_Os11g25640
OsAffx.12189.2.S1_at--578--10191Chr06:16070100..16070124 (25 bp)
TATTTCTATTTTTGTACTAGATGGG
LOC_Os06g28300
OsAffx.12189.2.S1_at--666--7931Chr06:16070076..16070100 (25 bp)
GGATTTTGCTGACATTCCACCTGAA
LOC_Os06g28300
Target Sequence 
ATTTCCCACTAGATTTTGTCGATCATCACCATATAAATCTAGCAGTAGCTTCTTTTGGACAACTTTCTTTCTGGCTTGAT
AGGGACCAGATGTTGGGCAGAGTGTTTGTGAGAGCAAAGTATAGAGATCTTGACTCGGTCCCCCGGAAAATAGTGTTGCA
GGATCCTTTGGGTAATGGTGGTGGAGGTGAATCATGGACTATTTCTATTTTTGTACTAGATGGGGATTTTGCTGACATTC
CACCTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12189.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis