Browse Element(s) Details


OsAffx.10805.2.A1_at

Description tigr:9634.m02698
TID=OsAffx.10805.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SWIM zinc finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2825011/11SWIM zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28220OsAffx.15641.1.S1_at11/116+16031679..16032240hypothetical protein
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein
LOC_Os06g28260OsAffx.15643.1.S1_at10/116+16057400..16059557hypothetical protein
LOC_Os06g28270OsAffx.27847.1.S1_at11/116+16061895..16063707hypothetical protein
LOC_Os06g28270OsAffx.8558.1.S1_at3/116+16061895..16063707hypothetical protein
LOC_Os06g28280OsAffx.18932.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28280Os.53142.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28290NANA6+16068092..16068775hypothetical protein
LOC_Os06g28300OsAffx.12189.2.S1_at11/116+16069800..16071707Zinc knuckle family protein, expressed
LOC_Os06g28310NANA6+16075347..16084871retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0009639biological_processresponse to red or far red light
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10805.2.A1_at--685--8471Chr06:16052034..16052058 (25 bp)
TGGCGTACGACATAGCAATGGCTGT
LOC_Os06g28250
OsAffx.10805.2.A1_at--374--6591Chr06:16052001..16052025 (25 bp)
GATTGCGTAGTCAGTCGAGGACATA
LOC_Os06g28250
OsAffx.10805.2.A1_at--493--951Chr06:16051984..16052008 (25 bp)
AGGACATACCAGGTGACACTCCAGT
LOC_Os06g28250
OsAffx.10805.2.A1_at--549--1091Chr06:16051891..16051986 (25 bp)
AGTCGCCGAAGTCTCATACCAAAGG
LOC_Os06g28250
OsAffx.10805.2.A1_at--423--451Chr06:16051786..16051810 (25 bp)
ATCTCAGGGATGGTCACTACGCGAA
LOC_Os06g28250
OsAffx.10805.2.A1_at--700--7091Chr06:16051774..16051798 (25 bp)
GTCACTACGCGAATACATGCCCGAA
LOC_Os06g28250
OsAffx.10805.2.A1_at--101--3531Chr06:16051759..16051783 (25 bp)
CATGCCCGAAAAATCCGGTGAATTT
LOC_Os06g28250
OsAffx.10805.2.A1_at--1097--7371Chr06:16051591..16051615 (25 bp)
GTGACCACACACTGCGAAGATGCCT
LOC_Os06g28250
OsAffx.10805.2.A1_at--673--3251Chr06:16051542..16051566 (25 bp)
CAACGACGCCAGGAACGATGAGCTC
LOC_Os06g28250
OsAffx.10805.2.A1_at--80--6311Chr06:16051526..16051550 (25 bp)
GATGAGCTCGACAAAACAGATGGTG
LOC_Os06g28250
OsAffx.10805.2.A1_at--942--6251Chr06:16051508..16051532 (25 bp)
GATGGTGATGATGTCGATCCCGATG
LOC_Os06g28250
Target Sequence 
TGGCGTACGACATAGCAATGGCTGTTTTGAAAGGATTGCGTAGTCAGTCGAGGACATACCAGGTGACACTCCAGTCGCCG
AAGTCTCATACCAAAGGAAGCATGGGAGTACCAGACGAGGAAGTAACACTTGGAGCCAAGGGAAAGAAGCTATGCACAAG
GGAATGCGGTTGGTGCCATCTCAGGGATGGTCACTACGCGAATACATGCCCGAAAAATCCGGTGAATTTTGACAAGATTA
GGAAGGTTGCAAATAGGGAGAGGGGAAAGAGAGGCAGGCCACGAGGATCAGGAAGGGGGAGAGGGTGTGGTGTGACTACG
TGCGGCGCAGCAAGGGGTAATGGAGCAAGAATAACAAGGAGGAATGGTGGCAGTGACCACACACTGCGAAGATGCCTGGA
AGACGAGTGGGAGTCGATGGGCAACGACGCCAGGAACGATGAGCTCGACAAAACAGATGGTGATGATGTCGATCCCGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10805.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis