Browse Element(s) Details


OsAffx.26108.1.S1_at

Description tigr:9634.m02697
TID=OsAffx.26108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2824010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28220OsAffx.15641.1.S1_at11/116+16031679..16032240hypothetical protein
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein
LOC_Os06g28260OsAffx.15643.1.S1_at10/116+16057400..16059557hypothetical protein
LOC_Os06g28270OsAffx.27847.1.S1_at11/116+16061895..16063707hypothetical protein
LOC_Os06g28270OsAffx.8558.1.S1_at3/116+16061895..16063707hypothetical protein
LOC_Os06g28280OsAffx.18932.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28280Os.53142.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26108.1.S1_at--583--10153Chr12:21215971..21215995 (25 bp)
TATACAAGGACCTCCAGCAGACAAT
NONE
OsAffx.26108.1.S1_at--430--9211Chr06:16042068..16042092 (25 bp)
TCCAGCAGACAATGGGTGCGGACAC
LOC_Os06g28240
OsAffx.26108.1.S1_at--114--9132Chr12:21215943..21215967 (25 bp)
TGCGGACACCGGTAACGTGTGCACT
NONE
OsAffx.26108.1.S1_at--215--7472Chr12:21215927..21215951 (25 bp)
GTGTGCACTACATATCTAACCAAAA
NONE
OsAffx.26108.1.S1_at--398--2531NONE
AACTTTCATTGTAACAGGTCAGGGA
NONE
OsAffx.26108.1.S1_at--375--7111Chr06:16041333..16041357 (25 bp)
GTCAGGGATTCATTCACCAGATGGG
LOC_Os06g28240
OsAffx.26108.1.S1_at--584--3391Chr06:16041303..16041327 (25 bp)
CAGCTGTGTTGTGCATCTTGTGCTT
LOC_Os06g28240
OsAffx.26108.1.S1_at--602--10831Chr06:16041295..16041319 (25 bp)
TTGTGCATCTTGTGCTTGCTGGGAT
LOC_Os06g28240
OsAffx.26108.1.S1_at--1010--5051Chr06:16041224..16041248 (25 bp)
GCAGCAGTGCAGCACGCCGGCACAA
LOC_Os06g28240
OsAffx.26108.1.S1_at--1094--3931Chr06:16041207..16041231 (25 bp)
CGGCACAAGCAGTCCGGGCAGCCAA
LOC_Os06g28240
OsAffx.26108.1.S1_at--795--7251Chr06:16041196..16041220 (25 bp)
GTCCGGGCAGCCAACAGCGGTGAAA
LOC_Os06g28240
Target Sequence 
TATACAAGGACCTCCAGCAGACAATGGGTGCGGACACCGGTAACGTGTGCACTACATATCTAACCAAAAAGAACTTTCAT
TGTAACAGGTCAGGGATTCATTCACCAGATGGGGCGTGCAGCTGTGTTGTGCATCTTGTGCTTGCTGGGATGGTGGATTG
CTGTGGTGCAGAGATGCAGCAGTGCAGCACGCCGGCACAAGCAGTCCGGGCAGCCAACAGCGGTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis