Browse Element(s) Details


OsAffx.15640.1.S1_at

Description tigr:9634.m02694
TID=OsAffx.15640.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2819411/11phosphoglucomutase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28150OsAffx.31802.2.S1_at5/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150OsAffx.31802.1.S1_at4/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150Os.50418.1.S1_at3/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28160OsAffx.4949.1.S1_at11/116+15995593..15999301hypothetical protein
LOC_Os06g28170OsAffx.31803.2.S1_at11/116+16001990..16005099hypothetical protein
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28220OsAffx.15641.1.S1_at11/116+16031679..16032240hypothetical protein
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0016868molecular_functionintramolecular transferase activity, phosphotransferases
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15640.1.S1_at--900--8171Chr06:16027355..16027379 (25 bp)
GGAACGAGCTAGATGCGGCAACGAT
LOC_Os06g28194
OsAffx.15640.1.S1_at--1007--9132Chr06:16027368..16027392 (25 bp)
TGCGGCAACGATGGTCGCACTTGAC
LOC_Os06g28194
OsAffx.15640.1.S1_at--204--7331Chr06:16027403..16027427 (25 bp)
GTGCTTCCACAAGCTGGCGACAGCG
LOC_Os06g28194
OsAffx.15640.1.S1_at--383--7591Chr06:16027435..16027459 (25 bp)
GGGCTTCCATCGAGCTCGACGCAGC
LOC_Os06g28194
OsAffx.15640.1.S1_at--702--5791Chr06:16027452..16027476 (25 bp)
GACGCAGCGACCATGGTCACGCTTA
LOC_Os06g28194
OsAffx.15640.1.S1_at--15--4151Chr06:16027488..16027512 (25 bp)
CGCGTTTCCACAAGCTGGCGACGGC
LOC_Os06g28194
OsAffx.15640.1.S1_at--1018--10671Chr06:16027528..16027552 (25 bp)
TTCCATCGAGCTAGCAGCCTGAAGA
LOC_Os06g28194
OsAffx.15640.1.S1_at--1049--3891Chr06:16027565..16027589 (25 bp)
CTGGGATAAGGCAAGAGCTCGCTGA
LOC_Os06g28194
OsAffx.15640.1.S1_at--1153--4211Chr06:16027601..16027625 (25 bp)
CCGCACGAGCTCTAGTAGGCATGGA
LOC_Os06g28194
OsAffx.15640.1.S1_at--394--451Chr06:16027625..16027649 (25 bp)
ATCTAGAGCGAGTTGGTCCTGAGCC
LOC_Os06g28194
OsAffx.15640.1.S1_at--195--1251Chr06:16027635..16027659 (25 bp)
AGTTGGTCCTGAGCCGTGTTGTCCT
LOC_Os06g28194
Target Sequence 
GGAACGAGCTAGATGCGGCAACGATGGTCGCACTTGACCCCTCAAGCCGTGCTTCCACAAGCTGGCGACAGCGGTGGAAG
GGGCTTCCATCGAGCTCGACGCAGCGACCATGGTCACGCTTAACCCCTCAAGCCGCGTTTCCACAAGCTGGCGACGGCGG
TGGCGGCGGCTGCTTCCATCGAGCTAGCAGCCTGAAGATGGTGACGGAAGCTGGGATAAGGCAAGAGCTCGCTGAGGGCG
CACCAGCCGCACGAGCTCTAGTAGGCATGGATCTAGAGCGAGTTGGTCCTGAGCCGTGTTGTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15640.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis