Browse Element(s) Details


OsAffx.31803.2.S1_at

Description tigr:9634.m02689
TID=OsAffx.31803.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2817011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28140NANA6+15976245..15980223retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g28150OsAffx.31802.2.S1_at5/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150OsAffx.31802.1.S1_at4/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28150Os.50418.1.S1_at3/116+15990591..15995008transposon protein, putative, unclassified, expressed
LOC_Os06g28160OsAffx.4949.1.S1_at11/116+15995593..15999301hypothetical protein
LOC_Os06g28170OsAffx.31803.2.S1_at11/116+16001990..16005099hypothetical protein
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31803.2.S1_at--900--3071Chr06:16002951..16002975 (25 bp)
AATCAGGCTTGTTCAGACATGTCAT
LOC_Os06g28170
OsAffx.31803.2.S1_at--800--6731Chr06:16002941..16002965 (25 bp)
GTTCAGACATGTCATGCGCGTGTCA
LOC_Os06g28170
OsAffx.31803.2.S1_at--249--7131Chr06:16002931..16002955 (25 bp)
GTCATGCGCGTGTCAGTGACCATAT
LOC_Os06g28170
OsAffx.31803.2.S1_at--1132--7371Chr06:16002916..16002940 (25 bp)
GTGACCATATCGTTAGCATCATCAG
LOC_Os06g28170
OsAffx.31803.2.S1_at--847--1711Chr06:16002732..16002756 (25 bp)
ACCACCTCAGCCTTGTAGGATCATA
LOC_Os06g28170
OsAffx.31803.2.S1_at--309--351Chr06:16002710..16002734 (25 bp)
ATAACACCGGATGCTGCGTTCAATC
LOC_Os06g28170
OsAffx.31803.2.S1_at--552--1731Chr06:16002626..16002650 (25 bp)
ACCATGGACAAGACTGCCAGTGCAG
LOC_Os06g28170
OsAffx.31803.2.S1_at--351--3451Chr06:16002609..16002633 (25 bp)
CAGTGCAGATGAAACTCAAGCCCTC
LOC_Os06g28170
OsAffx.31803.2.S1_at--674--1811Chr06:16002097..16002121 (25 bp)
ACCCAGTCCCATACTGTAGATGGTA
LOC_Os06g28170
OsAffx.31803.2.S1_at--987--851Chr06:16002033..16002057 (25 bp)
ATGGCATTGAGACCGTCATCTCCAA
LOC_Os06g28170
OsAffx.31803.2.S1_at--610--4011Chr06:16002020..16002044 (25 bp)
CGTCATCTCCAAGCAAGGTTGCCTG
LOC_Os06g28170
Target Sequence 
AATCAGGCTTGTTCAGACATGTCATGCGCGTGTCAGTGACCATATCGTTAGCATCATCAGGGGTGAAAGCCGCACTCAGC
CACCACTGGGTCCACAACCACAACTAGCCTCACATTCACAACCAGACAGCCAACACGGCCCAGTTGCATCGCCAACCAGC
GAGGAAGCACAAGACCACCACATTCACAACACCCCAGACATTTCACCTACCAACTCCCCACCACCTCAGCCTTGTAGGAT
CATAACACCGGATGCTGCGTTCAATCCGACACCACAGATCACATCCACTGAACCACACCCTCATTTACCGGGGGAGCTGT
TTCCGACCATGGACAAGACTGCCAGTGCAGATGAAACTCAAGCCCTCACTCCTCAGCCAGATGCGGATTTTCAAAGTGGC
TGCGATGTTGGTATTCCACTGCAAGCAGGAATTATTGATATTACCATGACTTTCGAGGGCACATACACAACCCAGTCCCA
TACTGTAGATGGTATTGAAGGGCACCACGATCTGCCAGATGTGGACAATGAACATGGCATTGAGACCGTCATCTCCAAGC
AAGGTTGCCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31803.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis