Browse Element(s) Details

OsAffx.31802.2.S1_at

Description

tigr:9634.m02540
TID=OsAffx.31802.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=FAR1 family, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25610	11/11	transposon protein, putative, unclassified
LOC_Os06g28150	5/11	transposon protein, putative, unclassified, expressed
LOC_Os12g18910	3/11	transposon protein, putative, unclassified
LOC_Os06g29870	2/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25580	Os.35344.18.S1_x_at	11/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	Os.35344.3.S1_x_at	9/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25580	OsAffx.22940.5.S1_x_at	3/11	6	+	14958946..14964967	Transposable element protein, putative, MuDR
LOC_Os06g25590	OsAffx.4938.1.S1_at	9/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.22815.2.S1_at	4/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.640.1.S1_x_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	Os.55083.1.S1_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25600	NA	NA	6	+	14969502..14969858	hypothetical protein
LOC_Os06g25610	OsAffx.31802.2.S1_at	11/11	6	+	14975516..14976790	transposon protein, putative, unclassified
LOC_Os06g25620	Os.46715.1.S1_x_at	1/11	6	+	14980692..14981762	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25630	OsAffx.20628.2.S1_x_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25630	OsAffx.22171.1.S1_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25640	NA	NA	6	+	14986791..14987186	retrotransposon protein, putative, unclassified
LOC_Os06g25650	OsAffx.22722.1.S1_at	1/11	6	+	14987531..14989775	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25660	Os.50418.1.S1_at	11/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed
LOC_Os06g25660	OsAffx.31802.1.S1_at	4/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed
LOC_Os06g25670	Os.46314.2.S1_x_at	3/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	Os.10731.2.A1_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	OsAffx.4949.1.S1_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	OsAffx.22896.1.S1_x_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	Os.45173.1.S1_x_at	1/11	6	+	14994186..15003157	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.31802.2.S1_at--351--51	2	Chr06:14976281..14976305 (25 bp)	ATCGTACAAGCAACGGGATGACACG	LOC_Os06g25610
OsAffx.31802.2.S1_at--60--723	1	Chr06:14976337..14976361 (25 bp)	GTCGCGTACCGCAAAGTAGTATAAT	LOC_Os06g25610
OsAffx.31802.2.S1_at--900--235	1	Chr06:14976524..14976548 (25 bp)	AAAGCGGCTAATGTTCGTGAGGAGA	LOC_Os06g25610
OsAffx.31802.2.S1_at--445--913	1	Chr06:14976550..14976574 (25 bp)	TGCGGACGACATAAGTAAGCTGCTG	LOC_Os06g25610
OsAffx.31802.2.S1_at--440--703	1	Chr06:14976564..14976588 (25 bp)	GTAAGCTGCTGAAATTTTTTAACGA	LOC_Os06g25610
OsAffx.31802.2.S1_at--277--645	3	Chr06:15991683..15991707 (25 bp)	GATAATCCTAAGTTTTACTGGGACA	LOC_Os06g28150
OsAffx.31802.2.S1_at--715--1085	3	Chr12:10974175..10974199 (25 bp)	TTGGAGCCACGCTAGTATGCAAGCA	LOC_Os12g18910
OsAffx.31802.2.S1_at--912--521	1	Chr06:14976686..14976710 (25 bp)	GAATATGCTAATTTCGGCGACGCCA	LOC_Os06g25610
OsAffx.31802.2.S1_at--856--1059	3	Chr12:10974212..10974236 (25 bp)	TTCGGCGACGCCATTACTTTTGACA	LOC_Os12g18910
OsAffx.31802.2.S1_at--364--203	4	Chr12:10974227..10974251 (25 bp)	ACTTTTGACACCACCTACAAGACTA	LOC_Os12g18910
OsAffx.31802.2.S1_at--1116--981	1	Chr06:14976736..14976760 (25 bp)	TAACATTTATGGGATGCTGTCACGC	LOC_Os06g25610

Target Sequence

ATCGTACAAGCAACGGGATGACACGTTGATGGAGTTTGTAGACACTATGCAGCAATGTCGCGTACCGCAAAGTAGTATAA
TGGGTGTGCTGTCCGAGATGCATGGAGACCGTGAAAGCATCCCTTTCACAAACAGAGATCTGGAAAACAGGAAAGCGGCT
AATGTTCGTGAGGAGAATGCGGACGACATAAGTAAGCTGCTGAAATTTTTTAACGAATGCAAGAAGGATAATCCTAAGTT
TTACTGGGACATAAAAACAGATGAAGAAGGGGTGGTAAAGAATGTATTTTGGAGCCACGCTAGTATGCAAGCAGAATATG
CTAATTTCGGCGACGCCATTACTTTTGACACCACCTACAAGACTAACATTTATGGGATGCTGTCACGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis