Browse Element(s) Details


OsAffx.4938.1.S1_at

Description tigr:9634.m02538
TID=OsAffx.4938.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g255909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25570OsAffx.15611.1.S1_at11/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.1.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.2.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25570OsAffx.17848.5.S1_x_at1/116+14945394..14948087hypothetical protein
LOC_Os06g25580Os.35344.18.S1_x_at11/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25580Os.35344.3.S1_x_at9/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25580OsAffx.22940.5.S1_x_at3/116+14958946..14964967Transposable element protein, putative, MuDR
LOC_Os06g25590OsAffx.4938.1.S1_at9/116+14968520..14969029hypothetical protein
LOC_Os06g25590OsAffx.22815.2.S1_at4/116+14968520..14969029hypothetical protein
LOC_Os06g25590OsAffx.640.1.S1_x_at1/116+14968520..14969029hypothetical protein
LOC_Os06g25590Os.55083.1.S1_at1/116+14968520..14969029hypothetical protein
LOC_Os06g25600NANA6+14969502..14969858hypothetical protein
LOC_Os06g25610OsAffx.31802.2.S1_at11/116+14975516..14976790transposon protein, putative, unclassified
LOC_Os06g25620Os.46715.1.S1_x_at1/116+14980692..14981762retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25630OsAffx.20628.2.S1_x_at1/116+14983598..14985853retrotransposon protein, putative, unclassified
LOC_Os06g25630OsAffx.22171.1.S1_at1/116+14983598..14985853retrotransposon protein, putative, unclassified
LOC_Os06g25640NANA6+14986791..14987186retrotransposon protein, putative, unclassified
LOC_Os06g25650OsAffx.22722.1.S1_at1/116+14987531..14989775retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25660Os.50418.1.S1_at11/116+14990042..14993388transposon protein, putative, unclassified, expressed
LOC_Os06g25660OsAffx.31802.1.S1_at4/116+14990042..14993388transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4938.1.S1_at--1158--5551Chr06:14968731..14968755 (25 bp)
GAAAGGGAGTACTAAGCATGGCGAA
LOC_Os06g25590
OsAffx.4938.1.S1_at--356--2871Chr06:14968733..14968757 (25 bp)
AAGGGAGTACTAAGCATGGCGAATC
LOC_Os06g25590
OsAffx.4938.1.S1_at--502--6091Chr06:14968737..14968761 (25 bp)
GAGTACTAAGCATGGCGAATCCGTT
LOC_Os06g25590
OsAffx.4938.1.S1_at--1151--1171Chr06:14968738..14968762 (25 bp)
AGTACTAAGCATGGCGAATCCGTTT
LOC_Os06g25590
OsAffx.4938.1.S1_at--812--2011Chr06:14968741..14968765 (25 bp)
ACTAAGCATGGCGAATCCGTTTTTA
LOC_Os06g25590
OsAffx.4938.1.S1_at--832--9791Chr06:14968743..14968767 (25 bp)
TAAGCATGGCGAATCCGTTTTTACC
LOC_Os06g25590
OsAffx.4938.1.S1_at--1047--10311Chr06:14968773..14968959 (25 bp)
TTTCAGAGGATTTGCAACTTGAGAA
LOC_Os06g25590
OsAffx.4938.1.S1_at--1125--6151NONE
GAGGATTTGCAACTTGAGAAACGAA
NONE
OsAffx.4938.1.S1_at--986--1251NONE
ACTTGAGAAACGAAGGAGTTACGCA
NONE
OsAffx.4938.1.S1_at--683--1391Chr06:14968956..14968980 (25 bp)
AGAAACGAAGGAGTTACGCAAGTGG
LOC_Os06g25590
OsAffx.4938.1.S1_at--852--10451Chr06:14968969..14968993 (25 bp)
TTACGCAAGTGGGAAGCTGGAGGTG
LOC_Os06g25590
Target Sequence 
GAAAGGGAGTACTAAGCATGGCGAATCCGTTTTTACCTTCAATTTCAGAGGATTTGCAACTTGAGAAACGAAGGAGTTAC
GCAAGTGGGAAGCTGGAGGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4938.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis