Browse Element(s) Details

Os.50418.1.S1_at

Description

gb:AK121132.1
DB_XREF= gi:37990755
TID=Os.50418.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075J24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075J24, full insert sequence.
FL= gb:AK121132.1
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g25660	11/11	transposon protein, putative, unclassified, expressed
LOC_Os06g28150	3/11	transposon protein, putative, unclassified, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g25590	OsAffx.4938.1.S1_at	9/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.22815.2.S1_at	4/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	OsAffx.640.1.S1_x_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25590	Os.55083.1.S1_at	1/11	6	+	14968520..14969029	hypothetical protein
LOC_Os06g25600	NA	NA	6	+	14969502..14969858	hypothetical protein
LOC_Os06g25610	OsAffx.31802.2.S1_at	11/11	6	+	14975516..14976790	transposon protein, putative, unclassified
LOC_Os06g25620	Os.46715.1.S1_x_at	1/11	6	+	14980692..14981762	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25630	OsAffx.20628.2.S1_x_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25630	OsAffx.22171.1.S1_at	1/11	6	+	14983598..14985853	retrotransposon protein, putative, unclassified
LOC_Os06g25640	NA	NA	6	+	14986791..14987186	retrotransposon protein, putative, unclassified
LOC_Os06g25650	OsAffx.22722.1.S1_at	1/11	6	+	14987531..14989775	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25660	Os.50418.1.S1_at	11/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed
LOC_Os06g25660	OsAffx.31802.1.S1_at	4/11	6	+	14990042..14993388	transposon protein, putative, unclassified, expressed
LOC_Os06g25670	Os.46314.2.S1_x_at	3/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	Os.10731.2.A1_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	OsAffx.4949.1.S1_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	OsAffx.22896.1.S1_x_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25670	Os.45173.1.S1_x_at	1/11	6	+	14994186..15003157	hypothetical protein
LOC_Os06g25680	Os.14491.2.S1_x_at	1/11	6	+	15005066..15007362	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g25680	Os.47463.1.S1_x_at	1/11	6	+	15005066..15007362	transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g25690	Os.54901.1.S1_at	1/11	6	+	15009499..15011115	hypothetical protein
LOC_Os06g25700	NA	NA	6	+	15012323..15013186	retrotransposon protein, putative, unclassified
LOC_Os06g25710	NA	NA	6	+	15014290..15017638	retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.50418.1.S1_at--637--843	2	Chr06:15994639..15994663 (25 bp)	GGCCTCACCCTCAATACATGGTGAT	LOC_Os06g28150
Os.50418.1.S1_at--976--211	1	Chr06:14992808..14992832 (25 bp)	ACATGGTGATTCATCCGGCTCGCAT	LOC_Os06g25660
Os.50418.1.S1_at--64--833	2	Chr06:14992824..14992848 (25 bp)	GGCTCGCATTCACCAGAGAGGTTGA	LOC_Os06g25660
Os.50418.1.S1_at--686--133	1	Chr06:14992840..14992864 (25 bp)	AGAGGTTGACTCCATCTCCGGTGAT	LOC_Os06g25660
Os.50418.1.S1_at--903--795	1	Chr06:14992874..14992898 (25 bp)	GGATCTACCTCCTGAGTTTTGTGTT	LOC_Os06g25660
Os.50418.1.S1_at--863--299	2	Chr06:15994829..15994853 (25 bp)	AATGATGGGTACGTGTCCACTCCAT	LOC_Os06g28150
Os.50418.1.S1_at--917--799	1	Chr06:14993090..14993114 (25 bp)	GGATGTGCTGCCTAAGGATAATCAA	LOC_Os06g25660
Os.50418.1.S1_at--779--37	1	Chr06:14993114..14993138 (25 bp)	ATCAAAGGATACAGCGTCACCACCG	LOC_Os06g25660
Os.50418.1.S1_at--490--709	1	Chr06:14993129..14993153 (25 bp)	GTCACCACCGAGCAAGCGCAAGAAG	LOC_Os06g25660
Os.50418.1.S1_at--374--485	1	Chr06:14993221..14993245 (25 bp)	GCTACTTTTTCTTAGTGGCTGTGCT	LOC_Os06g25660
Os.50418.1.S1_at--391--695	1	Chr06:14993322..14993346 (25 bp)	GTAGATGTCAGTGTCGCTATCATGA	LOC_Os06g25660

Target Sequence

GGCCTCACCCTCAATACATGGTGATTCATCCGGCTCGCATTCACCAGAGAGGTTGACTCCATCTCCGGTGATGCGTGAGG
TGGATCTACCTCCTGAGTTTTGTGTTAGGGGGTCGCCAACGCCAGACTGGCCACCACCACCTACAGAATCAGATGAAGAG
AGGTTTCGAGAAGATCTGGAGCAATACTACAATGATGGGTACGTGTCCACTCCATGCCCGTCACCACCATCTGATCTGTT
CGATTGCGAAGAAAATTTGGAGGATGGAGATGTGGAAGATGATAATTTGAGGCATGGGGATGTGCTGCCTAAGGATAATC
AATCAAAGGATACAGCGTCACCACCGAGCAAGCGCAAGAAGGTTTAGGATAGTACCGATAAGATTTGTCGTATTTAAATT
GATTATTGAATTGTCGTTTTAAATAATTGCTACTTTTTCTTAGTGGCTGTGCTTAAATTTGTTAGTTGTGAATTTGTGAG
TTTTGATCTAATTTCATGGGCATGAAATAAATAAGTTTATAAGTGTAGTGTAGATGTCAGTGTCGCTATCATGA

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis