Browse Element(s) Details


OsAffx.15641.1.S1_at

Description tigr:9634.m02695
TID=OsAffx.15641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2822011/11hypothetical protein
LOC_Os12g064301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28194Os.17494.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.17494.2.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194OsAffx.15640.1.S1_at11/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28194Os.25253.1.S1_at1/116+16010335..16031862phosphoglucomutase, putative, expressed
LOC_Os06g28220OsAffx.15641.1.S1_at11/116+16031679..16032240hypothetical protein
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15641.1.S1_at--428--9191Chr06:16032136..16032160 (25 bp)
TGCCTCTGCATCGTCCGAGATGTGG
LOC_Os06g28220
OsAffx.15641.1.S1_at--371--7991Chr06:16032109..16032133 (25 bp)
GGAGGGCCAGGCTGTATGGTCGCGT
LOC_Os06g28220
OsAffx.15641.1.S1_at--21--911Chr06:16032101..16032125 (25 bp)
AGGCTGTATGGTCGCGTGGCTGGAC
LOC_Os06g28220
OsAffx.15641.1.S1_at--303--5754Chr01:9525351..9525375 (25 bp)
GACGGGAAGGAGACTTCCCCACACT
NONE
OsAffx.15641.1.S1_at--1072--973Chr01:9525358..9525382 (25 bp)
AGGAGACTTCCCCACACTTCGCATA
NONE
OsAffx.15641.1.S1_at--903--7691Chr06:16032020..16032044 (25 bp)
GGGTCAGGCCTAGTTCAACTGAACC
LOC_Os06g28220
OsAffx.15641.1.S1_at--695--8411Chr06:16032015..16032038 (24 bp)
GGCCTAGTTCAACTGAACCACGGTT
LOC_Os06g28220
OsAffx.15641.1.S1_at--701--6751Chr06:16031761..16032032 (25 bp)
GTTCAACTGAACCACGGTTTCTATT
LOC_Os06g28220
OsAffx.15641.1.S1_at--683--5411Chr06:16031753..16032024 (25 bp)
GAACCACGGTTTCTATTGAAAGGAT
LOC_Os06g28220
OsAffx.15641.1.S1_at--1094--151Chr06:16031720..16031744 (25 bp)
ATTATAGTCTCTACATACTCTACAG
LOC_Os06g28220
OsAffx.15641.1.S1_at--1042--1151Chr06:16031715..16031739 (25 bp)
AGTCTCTACATACTCTACAGAAAGA
LOC_Os06g28220
Target Sequence 
TGCCTCTGCATCGTCCGAGATGTGGGGGGAGGGCCAGGCTGTATGGTCGCGTGGCTGGACGGGAAGGAGACTTCCCCACA
CTTCGCATACCCCCGGGCCCATATCACCGACAATAGGGGTCAGGCCTAGTTCAACTGAACCACGGTTTCTATTGAAAGGA
TATCAAAATATTATAGTCTCTACATACTCTACAGAAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis