Browse Element(s) Details


OsAffx.15643.1.S1_at

Description tigr:9634.m02699
TID=OsAffx.15643.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2826010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g28230NANA6+16038442..16038717hypothetical protein
LOC_Os06g28240OsAffx.26108.1.S1_at10/116+16041149..16042213hypothetical protein
LOC_Os06g28250OsAffx.10805.2.A1_at11/116+16051473..16055777SWIM zinc finger family protein
LOC_Os06g28260OsAffx.15643.1.S1_at10/116+16057400..16059557hypothetical protein
LOC_Os06g28270OsAffx.27847.1.S1_at11/116+16061895..16063707hypothetical protein
LOC_Os06g28270OsAffx.8558.1.S1_at3/116+16061895..16063707hypothetical protein
LOC_Os06g28280OsAffx.18932.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28280Os.53142.1.S1_at1/116+16064961..16066062retrotransposon protein, putative, unclassified
LOC_Os06g28290NANA6+16068092..16068775hypothetical protein
LOC_Os06g28300OsAffx.12189.2.S1_at11/116+16069800..16071707Zinc knuckle family protein, expressed
LOC_Os06g28310NANA6+16075347..16084871retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15643.1.S1_at--242--10771Chr06:16058728..16058752 (25 bp)
TTGTCTCACCGGTGGTTGTGGGTAA
LOC_Os06g28260
OsAffx.15643.1.S1_at--920--5611Chr06:16058694..16058718 (25 bp)
GACAACTCGCATTTCTGCCAGCATA
LOC_Os06g28260
OsAffx.15643.1.S1_at--640--7511Chr06:16058534..16058666 (25 bp)
GTGGATCGTCTCAAAAGCGTTAAAC
LOC_Os06g28260
OsAffx.15643.1.S1_at--839--1251Chr06:16058503..16058527 (25 bp)
AGATTGACTCCTCGGTGGCATATGC
LOC_Os06g28260
OsAffx.15643.1.S1_at--853--8491Chr06:16058488..16058512 (25 bp)
TGGCATATGCTTCCGATGTGGTTGA
LOC_Os06g28260
OsAffx.15643.1.S1_at--394--10691Chr06:16058418..16058442 (25 bp)
TTCCAGCTCTATGCTTTTCAAGGAT
LOC_Os06g28260
OsAffx.15643.1.S1_at--326--10131Chr06:16058391..16058415 (25 bp)
TATGACGATCAAACCAGACACCTTT
LOC_Os06g28260
OsAffx.15643.1.S1_at--489--2211Chr06:16058171..16058195 (25 bp)
ACAACCGTTCTCAGCCGATGCTTTG
LOC_Os06g28260
OsAffx.15643.1.S1_at--235--6471Chr06:16058117..16058141 (25 bp)
GATAAACACATCCAATGCTCAGCTG
LOC_Os06g28260
OsAffx.15643.1.S1_at--440--631NONE
ATGCTCAGCTGGCTTACGACGGCAG
NONE
OsAffx.15643.1.S1_at--518--8811Chr06:16057482..16057506 (25 bp)
TGTTCCAGCTTGTATCCAGCGATCA
LOC_Os06g28260
Target Sequence 
TTGTCTCACCGGTGGTTGTGGGTAACCCACAACCGACAACTCGCATTTCTGCCAGCATACAGCTCAGGGAATTCATGTTG
AAAAACGTGGATCGTCTCAAAAGCGTTAAACTTTTGGAGATTGACTCCTCGGTGGCATATGCTTCCGATGTGGTTGAGTC
ATTTTGTAACGGGAACTTGACCGAGGGGCTCTTCATAGACGCTTCCAGCTCTATGCTTTTCAAGGATGATATGACGATCA
AACCAGACACCTTTGGAAAAAGAATATTCATCCCAACAAATTTATTGTACCTATTGAACATCAACTTAATAAAGCATAAC
GGTGTCACACAACCGTTCTCAGCCGATGCTTTGGATAGTAGATTAGAAGAATTCATCCGGCAGATAAACACATCCAATGC
TCAGCTGGCTTACGACGGCAGCAGGGATCCCATCGAGACCCTCAACATCCCGACCAACTCGACGATTGTCCCCTCAAGCA
TCCTGTTCCAGCTTGTATCCAGCGATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15643.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis