Browse Element(s) Details


OsAffx.12189.1.S1_at

Description tigr:9630.m02370
TID=OsAffx.12189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2531011/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g25290NANA2+14740456..14745797retrotransposon protein, putative, unclassified
LOC_Os02g25300NANA2+14753100..14753504hypothetical protein
LOC_Os02g25310OsAffx.12189.1.S1_at11/112+14755685..14757928Zinc knuckle family protein
LOC_Os02g25310OsAffx.12189.2.S1_at1/112+14755685..14757928Zinc knuckle family protein
LOC_Os02g25320NANA2+14758787..14759077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25330NANA2+14760353..14764854transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g25340OsAffx.19950.1.S1_at1/112+14768621..14770567hypothetical protein
LOC_Os02g25340OsAffx.15648.1.S1_at1/112+14768621..14770567hypothetical protein
LOC_Os02g25350NANA2+14771289..14772413hypothetical protein
LOC_Os02g25360OsAffx.29316.1.S1_x_at8/112+14776593..14778118hypothetical protein
LOC_Os02g25370NANA2+14782511..14784953transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12189.1.S1_at--22--1372Chr06:16069782..16070213 (25 bp)
AGAGCAACAAGTGCAGCTGTTTCTG
NONE
OsAffx.12189.1.S1_at--405--10612Chr06:16069762..16069786 (25 bp)
TTCTGGCCAGGCTCAAGGATATAGC
NONE
OsAffx.12189.1.S1_at--893--1072Chr10:958150..958490 (25 bp)
AGGGAAGGACCAAAGCACCCATCTT
NONE
OsAffx.12189.1.S1_at--651--5092Chr10:958136..958160 (25 bp)
GCACCCATCTTTTTATCCTATGGCA
NONE
OsAffx.12189.1.S1_at--458--5511Chr02:14755901..14755925 (25 bp)
GAAAATTGACCATCTATGCAAAGCT
LOC_Os02g25310
OsAffx.12189.1.S1_at--834--9612Chr06:16069651..16069675 (25 bp)
TCATGCAGGCAGCTCAAATTCCTAG
NONE
OsAffx.12189.1.S1_at--313--9191Chr02:14755833..14755857 (25 bp)
TGCCATTCAGTTCCCCTTTCATGAC
LOC_Os02g25310
OsAffx.12189.1.S1_at--474--651Chr02:14755813..14755837 (25 bp)
ATGACCCTGGTACTCCTAAAGCGGA
LOC_Os02g25310
OsAffx.12189.1.S1_at--1105--933Chr10:958024..958048 (25 bp)
AGGCAATGTTTGATCATGCTCCTCC
NONE
OsAffx.12189.1.S1_at--696--10571Chr02:14755745..14755769 (25 bp)
TTCTAGCTGGGCTTTATTGTCTTCC
LOC_Os02g25310
OsAffx.12189.1.S1_at--1026--4171Chr02:14755720..14755744 (25 bp)
CCCTCTGATGATGGGCATTCTGATC
LOC_Os02g25310
Target Sequence 
AGAGCAACAAGTGCAGCTGTTTCTGGCCAGGCTCAAGGATATAGCTGACAGGGAAGGACCAAAGCACCCATCTTTTTATC
CTATGGCAGGATTGCTGGAGAAAATTGACCATCTATGCAAAGCTAAAGAAATCATGCAGGCAGCTCAAATTCCTAGCCCC
ACATCTCTGCCATTCAGTTCCCCTTTCATGACCCTGGTACTCCTAAAGCGGAAGGCAATGTTTGATCATGCTCCTCCTGT
AGTAAAAAGAGCACATTCTAGCTGGGCTTTATTGTCTTCCCCCTCTGATGATGGGCATTCTGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis