Browse Element(s) Details


OsAffx.8794.1.S1_at

Description gb:XM_353919.1
DB_XREF= gi:35189271
TID=OsAffx.8794.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g346001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34560OsAffx.27942.1.S1_at10/116+20097737..20099499Zinc finger, C3HC4 type family protein
LOC_Os06g34564OsAffx.20927.1.S1_x_at9/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.20927.1.S1_at8/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.17778.2.S1_at2/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.29316.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.14776.1.S1_x_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34564OsAffx.6537.1.S1_at1/116+20101691..20103442Myeloid/lymphoid or mixed-lineage leukemia protein 2, putative
LOC_Os06g34570OsAffx.27937.1.S1_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.27937.2.S1_s_at11/116+20105011..20111110hypothetical protein
LOC_Os06g34570OsAffx.17323.1.S1_at1/116+20105011..20111110hypothetical protein
LOC_Os06g34580OsAffx.22699.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34580OsAffx.8201.1.S1_x_at1/116+20111705..20116213retrotransposon protein, putative, unclassified
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34610NANA6+20125202..20125871expressed protein
LOC_Os06g34620NANA6+20130647..20131171Zinc finger, C3HC4 type family protein
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein
LOC_Os06g34640NANA6+20137223..20137693Zinc finger, C3HC4 type family protein
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8794.1.S1_at--594--1331Chr07:6672932..6672956 (25 bp)
AGAGTATTTGTCTCAATCGAACCAG
NONE
OsAffx.8794.1.S1_at--1041--3031Chr07:6672918..6672942 (25 bp)
AATCGAACCAGCCATGACTCTTATG
NONE
OsAffx.8794.1.S1_at--815--8031Chr07:6672846..6672870 (25 bp)
GGAGTATAAACCAATTATGCCTCGA
NONE
OsAffx.8794.1.S1_at--613--10111Chr07:6672831..6672855 (25 bp)
TATGCCTCGAAAAACCTCAGGACCA
NONE
OsAffx.8794.1.S1_at--264--6471Chr07:6672786..6672810 (25 bp)
GATAAATCAGAGTCGGTGTCGGACT
NONE
OsAffx.8794.1.S1_at--765--1811Chr07:6672764..6672788 (25 bp)
ACTCTGCCGGTAAAAACGGCCACAT
NONE
OsAffx.8794.1.S1_at--256--6431Chr07:6672734..6672757 (24 bp)
GATCAGACTGTCTCCTTGCTATCGC
NONE
OsAffx.8794.1.S1_at--530--6351Chr07:6671214..6671238 (25 bp)
GATGCGCATGCTGTTCTTCGAATAC
NONE
OsAffx.8794.1.S1_at--935--6731Chr07:6671202..6671226 (25 bp)
GTTCTTCGAATACAATTCTCCACAG
NONE
OsAffx.8794.1.S1_at--934--5258Chr11:24786150..24786170 (21 bp)
GAATCCACTTTGATTCCAATGTCAA
NONE
OsAffx.8794.1.S1_at--152--7092Chr04:644345..644365 (21 bp)
GTCAAACCTGGTTCATGATTTACCA
NONE
Target Sequence 
AGAGTATTTGTCTCAATCGAACCAGCCATGACTCTTATGGGTTGGGAGTATAAACCAATTATGCCTCGAAAAACCTCAGG
ACCAAGAAAGAAAACCCGGAAACCGATAAATCAGAGTCGGTGTCGGACTCTGCCGGTAAAAACGGCCACATGCCGCCGAT
CAGACTGTCTCCTTGCTATCGCCGACGCCGTCACAGCCGATGCGCATGCTGTTCTTCGAATACAATTCTCCACAGAATCC
ACTTTGATTCCAATGTCAAACCTGGTTCATGATTTACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8794.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis