Browse Element(s) Details


OsAffx.5006.1.S1_at

Description tigr:9634.m03274
TID=OsAffx.5006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3466010/11glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34590OsAffx.31829.1.S1_at11/116+20117370..20119153hypothetical protein
LOC_Os06g34600OsAffx.15923.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34600OsAffx.8794.1.S1_at1/116+20120528..20124292hypothetical protein
LOC_Os06g34610NANA6+20125202..20125871expressed protein
LOC_Os06g34620NANA6+20130647..20131171Zinc finger, C3HC4 type family protein
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein
LOC_Os06g34640NANA6+20137223..20137693Zinc finger, C3HC4 type family protein
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5006.1.S1_at--610--2611NONE
AACCCCACCACTAGCCAATGTTTGG
NONE
OsAffx.5006.1.S1_at--834--4351Chr06:20146013..20146034 (22 bp)
CCACCACTAGCCAATGTTTGGGAAG
LOC_Os06g34660
OsAffx.5006.1.S1_at--228--1571Chr06:20146011..20146034 (24 bp)
ACCACTAGCCAATGTTTGGGAAGTA
LOC_Os06g34660
OsAffx.5006.1.S1_at--223--4391Chr06:20146003..20146027 (25 bp)
CCAATGTTTGGGAAGTACGGCTCAT
LOC_Os06g34660
OsAffx.5006.1.S1_at--19--3211Chr06:20146002..20146026 (25 bp)
CAATGTTTGGGAAGTACGGCTCATA
LOC_Os06g34660
OsAffx.5006.1.S1_at--84--751Chr06:20146000..20146024 (25 bp)
ATGTTTGGGAAGTACGGCTCATATC
LOC_Os06g34660
OsAffx.5006.1.S1_at--358--6871Chr06:20145998..20146022 (25 bp)
GTTTGGGAAGTACGGCTCATATCAT
LOC_Os06g34660
OsAffx.5006.1.S1_at--1105--8631Chr06:20145995..20146019 (25 bp)
TGGGAAGTACGGCTCATATCATTAA
LOC_Os06g34660
OsAffx.5006.1.S1_at--1003--7591Chr06:20145994..20146018 (25 bp)
GGGAAGTACGGCTCATATCATTAAT
LOC_Os06g34660
OsAffx.5006.1.S1_at--199--8191Chr06:20145993..20146017 (25 bp)
GGAAGTACGGCTCATATCATTAATG
LOC_Os06g34660
OsAffx.5006.1.S1_at--968--2831Chr06:20145991..20146015 (25 bp)
AAGTACGGCTCATATCATTAATGGC
LOC_Os06g34660
Target Sequence 
AACCCCACCACTAGCCAATGTTTGGGAAGTACGGCTCATATCATTAATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis