Browse Element(s) Details


OsAffx.15923.1.S1_at

Description tigr:9634.m04311
TID=OsAffx.15923.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4451011/11hypothetical protein
LOC_Os06g346001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44480OsAffx.22940.2.S1_s_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.1.S1_s_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480Os.35344.3.S1_x_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480Os.35344.18.S1_x_at10/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.5.S1_x_at10/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.5.S1_at9/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.2.S1_at9/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.3.S1_x_at7/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.31552.2.S1_at1/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44490NANA6+26870786..26871034hypothetical protein
LOC_Os06g44500Os.52803.1.S1_at11/116+26875998..26877988Kelch motif family protein, expressed
LOC_Os06g44510OsAffx.15923.1.S1_at11/116+26884876..26885148hypothetical protein
LOC_Os06g44530OsAffx.16205.1.S1_at2/116+26889618..26891476hypothetical protein
LOC_Os06g44540OsAffx.28102.1.S1_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44540OsAffx.28102.1.S1_s_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44550Os.10709.1.S1_at2/116+26909660..26910425hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15923.1.S1_at--218--4971Chr06:26884941..26884965 (25 bp)
GCATCACACTGCATACCCTGGTGAT
LOC_Os06g44510
OsAffx.15923.1.S1_at--869--2171Chr06:26884946..26884970 (25 bp)
ACACTGCATACCCTGGTGATCTTGG
LOC_Os06g44510
OsAffx.15923.1.S1_at--840--1971Chr06:26884948..26884972 (25 bp)
ACTGCATACCCTGGTGATCTTGGTC
LOC_Os06g44510
OsAffx.15923.1.S1_at--321--3811Chr06:26884972..26884996 (25 bp)
CTCCTGGGAAAGAAATCTGGTGTGA
LOC_Os06g44510
OsAffx.15923.1.S1_at--389--5572Chr06:26884979..26885003 (25 bp)
GAAAGAAATCTGGTGTGAGCGAAAT
LOC_Os06g44510
OsAffx.15923.1.S1_at--100--8211Chr06:26885007..26885031 (25 bp)
GGAATTTTTTGAAACGCTGCCGGCA
LOC_Os06g44510
OsAffx.15923.1.S1_at--430--5211Chr06:26885008..26885032 (25 bp)
GAATTTTTTGAAACGCTGCCGGCAT
LOC_Os06g44510
OsAffx.15923.1.S1_at--542--3132Chr06:26885009..26885033 (25 bp)
AATTTTTTGAAACGCTGCCGGCATC
LOC_Os06g44510
OsAffx.15923.1.S1_at--842--10351Chr06:26885011..26885035 (25 bp)
TTTTTTGAAACGCTGCCGGCATCCA
LOC_Os06g44510
OsAffx.15923.1.S1_at--45--10411Chr06:26885013..26885037 (25 bp)
TTTTGAAACGCTGCCGGCATCCATC
LOC_Os06g44510
OsAffx.15923.1.S1_at--539--2691Chr06:26885088..26885112 (25 bp)
AAGCTTCAAGATATCGAAATTTTGG
LOC_Os06g44510
Target Sequence 
GCATCACACTGCATACCCTGGTGATCTTGGTCTCCTGGGAAAGAAATCTGGTGTGAGCGAAATGCAGGAATTTTTTGAAA
CGCTGCCGGCATCCATCCTCGCCAAGATCAGGGAGAAGGTCGGGCATGGGTCAAAGCAGGAGCCTTTAAGCTTCAAGATA
TCGAAATTTTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15923.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis