Browse Element(s) Details


Os.52803.1.S1_at

Description gb:AK069365.1
DB_XREF= gi:32979389
TID=Os.52803.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52803 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-G09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023014H04, full insert sequence.
FL= gb:AK105987.1 gb:AK069365.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4450011/11Kelch motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44460Os.24909.1.A1_s_at11/116+26853891..26857581D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os06g44470Os.7428.1.S1_at11/116+26858074..26858738Pollen allergen family protein, expressed
LOC_Os06g44480OsAffx.22940.2.S1_s_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.1.S1_s_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480Os.35344.3.S1_x_at11/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480Os.35344.18.S1_x_at10/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.5.S1_x_at10/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.5.S1_at9/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.2.S1_at9/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.22940.3.S1_x_at7/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44480OsAffx.31552.2.S1_at1/116+26861344..26868897transposon protein, putative, Mutator sub-class
LOC_Os06g44490NANA6+26870786..26871034hypothetical protein
LOC_Os06g44500Os.52803.1.S1_at11/116+26875998..26877988Kelch motif family protein, expressed
LOC_Os06g44510OsAffx.15923.1.S1_at11/116+26884876..26885148hypothetical protein
LOC_Os06g44530OsAffx.16205.1.S1_at2/116+26889618..26891476hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52803.1.S1_at--1071--2711Chr06:26876583..26876607 (25 bp)
AAGCACGTGACGATGCTTCCCGCTG
LOC_Os06g44500
Os.52803.1.S1_at--1017--1911Chr06:26876538..26876562 (25 bp)
ACGGGCGAAATCACACAGGCACTGC
LOC_Os06g44500
Os.52803.1.S1_at--426--8711Chr06:26876449..26876473 (25 bp)
TGTCCATCTCTGCATCTCAATTCTA
LOC_Os06g44500
Os.52803.1.S1_at--764--4971Chr06:26876438..26876462 (25 bp)
GCATCTCAATTCTATCTTGTCAGAG
LOC_Os06g44500
Os.52803.1.S1_at--902--8051Chr06:26876394..26876418 (25 bp)
GGAGCGTGCGTCTCTGTAAAACTTA
LOC_Os06g44500
Os.52803.1.S1_at--1062--6871Chr06:26876329..26876353 (25 bp)
GTATTAGATTCTTCATGTACCACTA
LOC_Os06g44500
Os.52803.1.S1_at--525--6311Chr06:26876245..26876269 (25 bp)
GATGACGTCGACAGCACTACTGAAT
LOC_Os06g44500
Os.52803.1.S1_at--937--1791Chr06:26876179..26876203 (25 bp)
ACCCCATTTCATTTCGTTCACTAAG
LOC_Os06g44500
Os.52803.1.S1_at--1048--2731Chr06:26876124..26876148 (25 bp)
AAGAATGTTTTGTTCCCAGCCACTG
LOC_Os06g44500
Os.52803.1.S1_at--962--4351Chr06:26876109..26876133 (25 bp)
CCAGCCACTGCGGAATTGTCATATA
LOC_Os06g44500
Os.52803.1.S1_at--926--271Chr06:26876085..26876109 (25 bp)
ATAGGCTCGGCTGTGTTTTGATTCA
LOC_Os06g44500
Target Sequence 
AAGCACGTGACGATGCTTCCCGCTGCTCACTGCTGACGCCCATCCACGGGCGAAATCACACAGGCACTGCCTTGGCACGG
GACCCACCTGTCAGTGACTCCGAATCGGGGGCTAAATGGTCTTTTCACCCCNGCTGTCCATCTCTGCATCTCAATTCTAT
CTTGTCAGAGGAGCAGAGGACGGAGGAATGGAGCGTGCGTCTCTGTAAAACTTAAATACCACCCATATTTAATTAATTAC
TCCTACTAGCAGTAGTATTAGATTCTTCATGTACCACTANNNGTATATTTGCAAATATTTGCACGAGGTTTTGAACAAAC
GAGAAAAAAGTGGTGAAGATCGATGACGTCGACAGCACTACTGAATGAATGAACAAAGTGGGGAAAAAGAAAAGAAAAAT
AATTCAAACCCCATTTCATTTCGTTCACTAAGGCAAAGTACTTACCAATAAGATGGTGAAGAAAGAATGTTTTGTTCCCA
GCCACTGCGGAATTGTCATATATAGGCTCGGCTGTGTTTTGATTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis