Browse Element(s) Details

Os.24909.1.A1_s_at

Description

gb:CF308917
DB_XREF= gi:33680678
DB_XREF=ABF--02-O15.g1
CLONE=ABF--02-O15
TID=Os.24909.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.24909 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_195146.1 (A.thaliana) Phosphoglycerate dehydrogenase - like protein (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g44460	11/11	D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g44420	OsAffx.5103.1.S1_at	11/11	6	+	26828648..26831191	expressed protein
LOC_Os06g44430	OsAffx.5104.1.S1_at	11/11	6	+	26832863..26835087	Protein kinase domain containing protein
LOC_Os06g44440	NA	NA	6	+	26837208..26838169	hypothetical protein
LOC_Os06g44450	Os.7920.1.S1_at	11/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44450	OsAffx.8265.1.A1_x_at	1/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44460	Os.24909.1.A1_s_at	11/11	6	+	26853891..26857581	D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os06g44470	Os.7428.1.S1_at	11/11	6	+	26858074..26858738	Pollen allergen family protein, expressed
LOC_Os06g44480	OsAffx.22940.2.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.1.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.3.S1_x_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.18.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.2.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.3.S1_x_at	7/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.31552.2.S1_at	1/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44490	NA	NA	6	+	26870786..26871034	hypothetical protein
LOC_Os06g44500	Os.52803.1.S1_at	11/11	6	+	26875998..26877988	Kelch motif family protein, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006564	biological_process	L-serine biosynthesis
GO:0009611	biological_process	response to wounding
GO:0005739	cellular_component	mitochondrion
GO:0009507	cellular_component	chloroplast
GO:0004617	molecular_function	phosphoglycerate dehydrogenase activity

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.24909.1.A1_s_at--459--1005	1	Chr06:26854448..26854472 (25 bp)	TAGATTCTATCCAGGTGCATCTCGC	LOC_Os06g44460
Os.24909.1.A1_s_at--39--733	1	Chr06:26854434..26854458 (25 bp)	GTGCATCTCGCCAATGTAGAGTCCA	LOC_Os06g44460
Os.24909.1.A1_s_at--814--729	1	Chr06:26854400..26854424 (25 bp)	GTGCCCTCTCTGACGAAGGTGACAT	LOC_Os06g44460
Os.24909.1.A1_s_at--917--555	1	Chr06:26854348..26854372 (25 bp)	GAAACCACATCTCACACTTGTTGGG	LOC_Os06g44460
Os.24909.1.A1_s_at--541--207	1	Chr06:26854333..26854357 (25 bp)	ACTTGTTGGGCCATTCAGTGTGGAT	LOC_Os06g44460
Os.24909.1.A1_s_at--888--793	1	Chr06:26854312..26854336 (25 bp)	GGATGTTAGTCTTGAGGGCAACCTA	LOC_Os06g44460
Os.24909.1.A1_s_at--755--263	1	Chr06:26854293..26854317 (25 bp)	AACCTAATACTCTGCCGTCAAGTTG	LOC_Os06g44460
Os.24909.1.A1_s_at--1136--163	1	Chr06:26854200..26854224 (25 bp)	AGCGTTGGAAGGACTGCTCCTGGAA	LOC_Os06g44460
Os.24909.1.A1_s_at--32--541	1	Chr06:26854131..26854155 (25 bp)	GAAGCTCTCAAGTTGATCGGCGACA	LOC_Os06g44460
Os.24909.1.A1_s_at--143--641	1	Chr06:26854117..26854141 (25 bp)	GATCGGCGACATACCATCAGTTGAG	LOC_Os06g44460
Os.24909.1.A1_s_at--227--697	1	Chr06:26854050..26854074 (25 bp)	GTAGCTTACCACAATAACATCCTCT	LOC_Os06g44460

Target Sequence

TAGATTCTATCCAGGTGCATCTCGCCAATGTAGAGTCCAAGTTNGCCGGTGCCCTCTCTGACGAAGGTGACATCAGAGTG
GAGGGAGAGGTGAAGGATGGGAAACCACATCTCACACTTGTTGGGCCATTCAGTGTGGATGTTAGTCTTGAGGGCAACCT
AATACTCTGCCGTCAAGTTGATCAGCCAGGTATCATTGGAAAGGTAGGATCAATTTTGGGGAAGATGAATGTGAATGTGA
ATTTCATGAGCGTTGGAAGGACTGCTCCTGGAAAGCAGGCGATAATGGCCATTGGGGTTGATGAGGAGCCTGAGAAGGAA
GCTCTCAAGTTGATCGGCGACATACCATCAGTTGAGGAGTTTGTCTTTATTAAGCTTTAGATAANAAGGTGTATAACAGT
AGCTTACCACAATAACATCCTCT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis