Browse Element(s) Details

Os.7920.1.S1_at

Description

gb:CB684051
DB_XREF= gi:29687776
DB_XREF=OSJNEf13D06.r
CLONE=OSJNEf13D06
TID=Os.7920.1
CNT=18
FEA=EST
TIER=Stack
STK=9
UG=Os.7920 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_568863.1 (A.thaliana) CONSTANS-like B-box zinc finger protein-like (Arabidopsis thaliana)
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g44450	11/11	CONSTANS-like protein CO6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g44420	OsAffx.5103.1.S1_at	11/11	6	+	26828648..26831191	expressed protein
LOC_Os06g44430	OsAffx.5104.1.S1_at	11/11	6	+	26832863..26835087	Protein kinase domain containing protein
LOC_Os06g44440	NA	NA	6	+	26837208..26838169	hypothetical protein
LOC_Os06g44450	Os.7920.1.S1_at	11/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44450	OsAffx.8265.1.A1_x_at	1/11	6	+	26842124..26843644	CONSTANS-like protein CO6, putative, expressed
LOC_Os06g44460	Os.24909.1.A1_s_at	11/11	6	+	26853891..26857581	D-3-phosphoglycerate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os06g44470	Os.7428.1.S1_at	11/11	6	+	26858074..26858738	Pollen allergen family protein, expressed
LOC_Os06g44480	OsAffx.22940.2.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.1.S1_s_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.3.S1_x_at	11/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	Os.35344.18.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_x_at	10/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.5.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.2.S1_at	9/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.22940.3.S1_x_at	7/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class
LOC_Os06g44480	OsAffx.31552.2.S1_at	1/11	6	+	26861344..26868897	transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0009909	biological_process	regulation of flower development
GO:0045449	biological_process	regulation of transcription
GO:0003700	molecular_function	transcription factor activity
GO:0008270	molecular_function	zinc ion binding

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
Os.7920.1.S1_at--652--215	1	Chr06:26842694..26842718 (25 bp)	ACAGCGTAGTAAGCGCGCAGATGTC	LOC_Os06g44450
Os.7920.1.S1_at--443--415	1	Chr06:26842350..26842374 (25 bp)	CGCGCCGTCGCTTGTAATCTTGTAT	LOC_Os06g44450
Os.7920.1.S1_at--481--449	1	Chr06:26842347..26842371 (25 bp)	GCCGTCGCTTGTAATCTTGTATCAA	LOC_Os06g44450
Os.7920.1.S1_at--721--707	1	Chr06:26842337..26842361 (25 bp)	GTAATCTTGTATCAAATCGATCGAT	LOC_Os06g44450
Os.7920.1.S1_at--642--755	1	Chr06:26842302..26842326 (25 bp)	GGGCGTAGTAATCCCATGTAGTACT	LOC_Os06g44450
Os.7920.1.S1_at--1089--705	1	Chr06:26842295..26842319 (25 bp)	GTAATCCCATGTAGTACTCATTTTG	LOC_Os06g44450
Os.7920.1.S1_at--990--117	1	Chr06:26842283..26842307 (25 bp)	AGTACTCATTTTGAGCTAGCTCACG	LOC_Os06g44450
Os.7920.1.S1_at--413--1001	1	Chr06:26842267..26842291 (25 bp)	TAGCTCACGCTAGTTTTGTACACTA	LOC_Os06g44450
Os.7920.1.S1_at--628--1003	1	Chr06:26842257..26842281 (25 bp)	TAGTTTTGTACACTACTACTGCTAC	LOC_Os06g44450
Os.7920.1.S1_at--623--991	1	Chr06:26842241..26842265 (25 bp)	TACTGCTACTAATTACGTGCTTACT	LOC_Os06g44450
Os.7920.1.S1_at--251--517	1	Chr06:26842189..26842213 (25 bp)	GCAAGATCATCTATATTGTATTAGC	LOC_Os06g44450

Target Sequence

ACAGCGTAGTAAGCGCGCAGATGTCGTCGTCGGTGGTCGACGTGGGCGTGGTGCCGGAGCGGGCGGCGGCGATGGGGGAA
GGGAGGGAGGCGAGGCTGATGAGGTACAGGGAGAAGCGGAAGAACCGGCGGTTCGAGAAGACGATCCGGTACGCGTCGCG
CAAGGCCTACGCCGAGACGCGCCCCCGGATCAAGGGCCGCTTCGCCAAGCGCGCCGACCACGACGCCGACGACGCCGACG
CCGACGCCGACGACCCCGCCGCCGTCCCATCCTCCTACATGCTCGACTTCGGCTACGGCGTCGTCCCGTCCTTCTGATCG
CCGCCCGCCGCCGGCCACCGCCGCCGCGCCGTCGCTTGTAATCTTGTATCAAATCGATCGATCGATGTGTAGGGGCGTAG
TAATCCCATGTAGTACTCATTTTGAGCTAGCTCACGCTAGTTTTGTACACTACTACTGCTACTAATTACGTGCTTACTAC
TTAGTGGTAATTATTTTTTTGATCAGCAAGATCATCTATATTGTATTAGC

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis