Browse Element(s) Details


OsAffx.28102.1.S1_at

Description tigr:9634.m04314
TID=OsAffx.28102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GMC oxidoreductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4454011/11GMC oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44510OsAffx.15923.1.S1_at11/116+26884876..26885148hypothetical protein
LOC_Os06g44530OsAffx.16205.1.S1_at2/116+26889618..26891476hypothetical protein
LOC_Os06g44540OsAffx.28102.1.S1_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44540OsAffx.28102.1.S1_s_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44550Os.10709.1.S1_at2/116+26909660..26910425hypothetical protein
LOC_Os06g44560NANA6+26912011..26912337retrotransposon protein, putative, unclassified
LOC_Os06g44570NANA6+26913275..26915990retrotransposon protein, putative, unclassified
LOC_Os06g44580Os.28943.1.S1_x_at2/116+26919260..26919709retrotransposon protein, putative, unclassified
LOC_Os06g44590NANA6+26920479..26926247retrotransposon protein, putative, unclassified
LOC_Os06g44600NANA6+26926882..26927208retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007267biological_processcell-cell signaling
GO:0046202biological_processcyanide biosynthesis
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28102.1.S1_at--384--2071Chr06:26906369..26906393 (25 bp)
ACATTCAGGGAAACACCTGGGACCA
LOC_Os06g44540
OsAffx.28102.1.S1_at--701--1771Chr06:26906383..26906407 (25 bp)
ACCTGGGACCAATCCTCAAGCCACA
LOC_Os06g44540
OsAffx.28102.1.S1_at--995--8851Chr06:26906847..26906871 (25 bp)
TGATCCAACAGAAAACCATTCGGCT
LOC_Os06g44540
OsAffx.28102.1.S1_at--1017--2131Chr06:26906854..26906878 (25 bp)
ACAGAAAACCATTCGGCTCTGCCGT
LOC_Os06g44540
OsAffx.28102.1.S1_at--468--2431Chr06:26906858..26906882 (25 bp)
AAAACCATTCGGCTCTGCCGTATGA
LOC_Os06g44540
OsAffx.28102.1.S1_at--1105--1731Chr06:26906861..26906885 (25 bp)
ACCATTCGGCTCTGCCGTATGAAGT
LOC_Os06g44540
OsAffx.28102.1.S1_at--986--1491Chr06:26906988..26907012 (25 bp)
AGCACGAGAGAAGCAGGACTTGCCT
LOC_Os06g44540
OsAffx.28102.1.S1_at--453--471Chr06:26907063..26907087 (25 bp)
ATCTGCAGAGCAGTTGATCTGATGC
LOC_Os06g44540
OsAffx.28102.1.S1_at--1131--3431Chr06:26907073..26907097 (25 bp)
CAGTTGATCTGATGCGTATCTGCGC
LOC_Os06g44540
OsAffx.28102.1.S1_at--453--6411Chr06:26907078..26907102 (25 bp)
GATCTGATGCGTATCTGCGCCTTTA
LOC_Os06g44540
OsAffx.28102.1.S1_at--1092--3851Chr06:26907081..26907105 (25 bp)
CTGATGCGTATCTGCGCCTTTACTT
LOC_Os06g44540
Target Sequence 
ACATTCAGGGAAACACCTGGGACCAATCCTCAAGCCACAATCATGATGATGGGCAGGTATATAGGGCAGAAGATGATTGA
TGAGCGTCACAGCAGAAGGCAAGTCAGAACATCAACAGATTCCTCTTCCAACGCCTGATAAAAACTGATCCAACAGAAAA
CCATTCGGCTCTGCCGTATGAAGTCGATCCATATTTCTTTTACTTTTTTTTGCTAACGCTATATTATGTATAGGCGCTAT
AGAGAAATAGCTTGGAGGGTAATGTTTTATGTGTGTGTACAGTGATAGCACGAGAGAAGCAGGACTTGCCTAGACAATAC
GTTTTTTTTTTGCCTTGTGAATAGCAGCATGATACTGGTATATCTGCAGAGCAGTTGATCTGATGCGTATCTGCGCCTTT
ACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28102.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis