Browse Element(s) Details


OsAffx.28102.1.S1_s_at

Description tigr:9634.m04314
TID=OsAffx.28102.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=GMC oxidoreductase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4454011/11GMC oxidoreductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44510OsAffx.15923.1.S1_at11/116+26884876..26885148hypothetical protein
LOC_Os06g44530OsAffx.16205.1.S1_at2/116+26889618..26891476hypothetical protein
LOC_Os06g44540OsAffx.28102.1.S1_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44540OsAffx.28102.1.S1_s_at11/116+26903487..26907141GMC oxidoreductase family protein, expressed
LOC_Os06g44550Os.10709.1.S1_at2/116+26909660..26910425hypothetical protein
LOC_Os06g44560NANA6+26912011..26912337retrotransposon protein, putative, unclassified
LOC_Os06g44570NANA6+26913275..26915990retrotransposon protein, putative, unclassified
LOC_Os06g44580Os.28943.1.S1_x_at2/116+26919260..26919709retrotransposon protein, putative, unclassified
LOC_Os06g44590NANA6+26920479..26926247retrotransposon protein, putative, unclassified
LOC_Os06g44600NANA6+26926882..26927208retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0007267biological_processcell-cell signaling
GO:0046202biological_processcyanide biosynthesis
GO:0005576cellular_componentextracellular region
GO:0016832molecular_functionaldehyde-lyase activity
GO:0046593molecular_functionmandelonitrile lyase activity
GO:0050660molecular_functionFAD binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28102.1.S1_s_at--1085--4411Chr06:26906209..26906233 (25 bp)
GCCAGTTGACTGGAGAACAAATGAC
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--681--5971Chr06:26906221..26906245 (25 bp)
GAGAACAAATGACACAGCTCTGGGT
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--220--2191Chr06:26906232..26906256 (25 bp)
ACACAGCTCTGGGTGATTTCTGCCA
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--461--6531Chr06:26906246..26906270 (25 bp)
GATTTCTGCCAGCAGACTGTGGCAA
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--607--5731Chr06:26906260..26906284 (25 bp)
GACTGTGGCAACATTATGGCATTAT
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--1049--8551Chr06:26906310..26906334 (25 bp)
TGGTTGACAGGGATTTCCGTGTTTT
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--343--191Chr06:26906322..26906346 (25 bp)
ATTTCCGTGTTTTTCGTGTGCGTGC
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--329--5051Chr06:26906793..26906817 (25 bp)
GCAGAAGGCAAGTCAGAACATCAAC
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--592--10371Chr06:26906966..26906990 (25 bp)
TTTTATGTGTGTGTACAGTGATAGC
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--689--10371Chr06:26907027..26907051 (25 bp)
TTTTTTGCCTTGTGAATAGCAGCAT
LOC_Os06g44540
OsAffx.28102.1.S1_s_at--704--5231Chr06:26907040..26907064 (25 bp)
GAATAGCAGCATGATACTGGTATAT
LOC_Os06g44540
Target Sequence 
GCCAGTTGACTGGAGAACAAATGACACAGCTCTGGGTGATTTCTGCCAGCAGACTGTGGCAACATTATGGCATTATCATG
GAGGATGTGTAGCTGGAAGTGTGGTTGACAGGGATTTCCGTGTTTTTCGTGTGCGTGCTCTTCGTGTGGTGGATGGATCA
ACATTCAGGGAAACACCTGGGACCAATCCTCAAGCCACAATCATGATGATGGGCAGGTATATAGGGCAGAAGATGATTGA
TGAGCGTCACAGCAGAAGGCAAGTCAGAACATCAACAGATTCCTCTTCCAACGCCTGATAAAAACTGATCCAACAGAAAA
CCATTCGGCTCTGCCGTATGAAGTCGATCCATATTTCTTTTACTTTTTTTTGCTAACGCTATATTATGTATAGGCGCTAT
AGAGAAATAGCTTGGAGGGTAATGTTTTATGTGTGTGTACAGTGATAGCACGAGAGAAGCAGGACTTGCCTAGACAATAC
GTTTTTTTTTTGCCTTGTGAATAGCAGCATGATACTGGTATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28102.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis