Browse Element(s) Details


Os.12204.1.S1_at

Description gb:AK069949.1
DB_XREF= gi:32979973
TID=Os.12204.1
CNT=20
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.12204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023034K12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023034K12, full insert sequence.
FL= gb:AK069949.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3469011/11T-complex protein 1, gamma subunit, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34630OsAffx.5005.1.S1_at10/116+20133624..20134277hypothetical protein
LOC_Os06g34640NANA6+20137223..20137693Zinc finger, C3HC4 type family protein
LOC_Os06g34650Os.51533.1.S1_at11/116+20142948..20143669Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g34660Os.56170.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34660OsAffx.5006.1.S1_at10/116+20144121..20147102glucan endo-1,3-beta-glucosidase 1 precursor, putative, expressed
LOC_Os06g34670OsAffx.31347.1.S1_at10/116+20148014..20149254hypothetical protein
LOC_Os06g34680NANA6+20149649..20150755transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein
LOC_Os06g34720OsAffx.15744.1.S1_at11/116+20173436..20174355hypothetical protein
LOC_Os06g34730Os.20169.1.S1_at11/116+20177127..20178046expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.12204.1.S1_at--669--2751Chr06:20164061..20164085 (25 bp)
AAGACAGCTATCGAGGCAGCTTGCA
LOC_Os06g34690
Os.12204.1.S1_at--17--5791Chr06:20164100..20164124 (25 bp)
GACGACATCGTCAGCGGTATCAAGA
LOC_Os06g34690
Os.12204.1.S1_at--535--3851Chr06:20164241..20164265 (25 bp)
CTGCACTGGCGATGTTATGCTCTAA
LOC_Os06g34690
Os.12204.1.S1_at--1068--1551Chr06:20164312..20164336 (25 bp)
AGCTTTTGCGAGTTGTGTTTCTTGA
LOC_Os06g34690
Os.12204.1.S1_at--1090--6851Chr06:20164339..20164363 (25 bp)
GTTTGTTCTTGGCTAAGCCTCCAGG
LOC_Os06g34690
Os.12204.1.S1_at--62--2991Chr06:20164387..20164411 (25 bp)
AATGTGCCGCTTTTATATGTTTGAT
LOC_Os06g34690
Os.12204.1.S1_at--614--7871Chr06:20164427..20164451 (25 bp)
GGTTTCTCGTTCTGTGTATTGTATC
LOC_Os06g34690
Os.12204.1.S1_at--310--151Chr06:20164455..20164479 (25 bp)
ATTTTGGGATCCCACGTTCTGCGGG
LOC_Os06g34690
Os.12204.1.S1_at--1106--7671Chr06:20164478..20164502 (25 bp)
GGGTTAGCTGCTGTTCGTTTTATTA
LOC_Os06g34690
Os.12204.1.S1_at--380--2991Chr06:20164502..20164526 (25 bp)
AATGTACCTCGTACTGGACGGCTAC
LOC_Os06g34690
Os.12204.1.S1_at--838--9991Chr06:20164558..20164582 (25 bp)
TAGCTTTATGACTTGCATTCCTTAA
LOC_Os06g34690
Target Sequence 
AAGACAGCTATCGAGGCAGCTTGCATGCTTCTTAGGATCGACGACATCGTCAGCGGTATCAAGAAGAAGCAGGCTCCTGG
AGCCTCAGCTCCTAAACAGCCTCAGATCGAACAGGAGGGTGACGCGGACAATGAGCAGATGATCCCNAGAGTAGAACTTG
TGTGCTGTTGGTGTGAGGAGCCTGCACTGGCGATGTTATGCTCTAAAGCCAGAGTAAGCCCATGAAGGGAGAACGGCTAG
TTTGACATGTGAAGCTTTTGCGAGTTGTGTTTCTTGAATGTTTGTTCTTGGCTAAGCCTCCAGGGTTTTTTCTGGTTTTA
GTTTGAAAATGTGCCGCTTTTATATGTTTGATTTAGGGGCACGATGAGGTTTCTCGTTCTGTGTATTGTATCAGCATTTT
GGGATCCCACGTTCTGCGGGGTTAGCTGCTGTTCGTTTTATTAATGTACCTCGTACTGGACGGCTACCGGAACTTTGATT
AAGCAGCAACACTAGTATTAGCTTTATGACTTGCATTCCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.12204.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis