Browse Element(s) Details


Os.20169.1.S1_at

Description gb:AK108390.1
DB_XREF= gi:32993599
TID=Os.20169.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20169 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-142-F04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F04, full insert sequence.
FL= gb:AK108390.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3473011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34690Os.12204.1.S1_at11/116+20157644..20164610T-complex protein 1, gamma subunit, putative, expressed
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein
LOC_Os06g34720OsAffx.15744.1.S1_at11/116+20173436..20174355hypothetical protein
LOC_Os06g34730Os.20169.1.S1_at11/116+20177127..20178046expressed protein
LOC_Os06g34740OsAffx.5009.1.S1_at11/116+20190208..20191869NA
LOC_Os06g34750NANA6+20194559..20194865hypothetical protein
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20169.1.S1_at--1085--9331Chr06:20177617..20177641 (25 bp)
TCGCTGTCCGACTTCGACGGTGGTG
LOC_Os06g34730
Os.20169.1.S1_at--67--4071Chr06:20177447..20177471 (25 bp)
CGAGTTCGTCAGAGAGCCGTGCTAC
LOC_Os06g34730
Os.20169.1.S1_at--1140--7291Chr06:20177429..20177453 (25 bp)
GTGCTACTACACTTACGGCTACGGT
LOC_Os06g34730
Os.20169.1.S1_at--1017--9911Chr06:20177410..20177434 (25 bp)
TACGGTTACAACGAGAGCTCACATG
LOC_Os06g34730
Os.20169.1.S1_at--546--1371Chr06:20177397..20177421 (25 bp)
AGAGCTCACATGTCGAGCAGCCGTA
LOC_Os06g34730
Os.20169.1.S1_at--636--1671Chr06:20177379..20177403 (25 bp)
AGCCGTACAGCCCACTTTGGGAATA
LOC_Os06g34730
Os.20169.1.S1_at--855--6511Chr06:20177278..20177302 (25 bp)
GATATATCTTCAGGGTTTCTTCGGA
LOC_Os06g34730
Os.20169.1.S1_at--359--10551Chr06:20177262..20177286 (25 bp)
TTCTTCGGATCGTAGGAACTTTAGA
LOC_Os06g34730
Os.20169.1.S1_at--7--7991Chr06:20177226..20177250 (25 bp)
GGATCCAATTCCTACAGGATTTAAG
LOC_Os06g34730
Os.20169.1.S1_at--1014--6851Chr06:20177202..20177226 (25 bp)
GTATTGTTCACTCAATTCGGTTTGG
LOC_Os06g34730
Os.20169.1.S1_at--808--10291Chr06:20177144..20177168 (25 bp)
TTTCCTTCACCTATGATTTCATAAG
LOC_Os06g34730
Target Sequence 
TCGCTGTCCGACTTCGACGGTGGTGGCAGCAGCCGGCCGGGCTCGTGCTCGGCGCCGCCGTTCGAGTACTGGGCGCGGGC
GGAGTTGCCGCCGGCGATGGGGCNCGACATGGGCGGCGGCTGGTGCGTCGACGGCGACGGCGACGGCCTCGCCGCCGCCG
TGGCAGGGTACGAGTTCGTCAGAGAGCCGTGCTACTACACTTACGGCTACGGTTACAACGAGAGCTCACATGTCGAGCAG
CCGTACAGCCCACTTTGGGAATAATTGACAAATTAAATAAAATTTAGGAAAAGAGGCAAGAAAAAAAAAAGATATGCAAT
CATGGACTAAATGAGGGCAGATATATCTTCAGGGTTTCTTCGGATCGTAGGAACTTTAGAAGAAAATTGGNGGATCCAAT
TCCTACAGGATTTAAGTATTGTTCACTCAATTCGGTTTGGAGGAATTGGGCATGTGAAAATTGGAAGATTTTTTTTCCTT
CACCTATGATTTCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis