Browse Element(s) Details


OsAffx.5009.1.S1_at

Description tigr:9634.m03282
TID=OsAffx.5009.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3474011/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34700OsAffx.5008.1.S1_at10/116+20165748..20167757hypothetical protein
LOC_Os06g34710OsAffx.15743.1.S1_at11/116+20168369..20171314expressed protein
LOC_Os06g34720OsAffx.15744.1.S1_at11/116+20173436..20174355hypothetical protein
LOC_Os06g34730Os.20169.1.S1_at11/116+20177127..20178046expressed protein
LOC_Os06g34740OsAffx.5009.1.S1_at11/116+20190208..20191869NA
LOC_Os06g34750NANA6+20194559..20194865hypothetical protein
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified
LOC_Os06g34770NANA6+20209488..20209965hypothetical protein
LOC_Os06g34780OsAffx.5011.1.S1_at11/116+20212106..20214877expressed protein
LOC_Os06g34780Os.22962.2.A1_at1/116+20212106..20214877expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5009.1.S1_at--86--5391Chr06:20191639..20191834 (25 bp)
GAAGCTGTCAAAAAATAATGGCTGG
LOC_Os06g34740
OsAffx.5009.1.S1_at--774--4671Chr06:20191619..20191643 (25 bp)
GCTGGAAAAGGCTCGATCAAGGGAA
LOC_Os06g34740
OsAffx.5009.1.S1_at--441--8151Chr06:20191616..20191640 (25 bp)
GGAAAAGGCTCGATCAAGGGAATGA
LOC_Os06g34740
OsAffx.5009.1.S1_at--1116--2291Chr06:20191613..20191637 (25 bp)
AAAGGCTCGATCAAGGGAATGAAAA
LOC_Os06g34740
OsAffx.5009.1.S1_at--40--5511Chr06:20191340..20191617 (25 bp)
GAAAAGGAAATGCAAAGCTGTAAGC
LOC_Os06g34740
OsAffx.5009.1.S1_at--289--2291Chr06:20191327..20191349 (23 bp)
AAAGCTGTAAGCTCAAAGCCGACAT
LOC_Os06g34740
OsAffx.5009.1.S1_at--268--2691Chr06:20191326..20191349 (24 bp)
AAGCTGTAAGCTCAAAGCCGACATG
LOC_Os06g34740
OsAffx.5009.1.S1_at--814--1611Chr06:20191325..20191349 (25 bp)
AGCTGTAAGCTCAAAGCCGACATGG
LOC_Os06g34740
OsAffx.5009.1.S1_at--841--4731Chr06:20191324..20191348 (25 bp)
GCTGTAAGCTCAAAGCCGACATGGA
LOC_Os06g34740
OsAffx.5009.1.S1_at--1161--8731Chr06:20191322..20191346 (25 bp)
TGTAAGCTCAAAGCCGACATGGATC
LOC_Os06g34740
OsAffx.5009.1.S1_at--1157--9771Chr06:20191320..20191344 (25 bp)
TAAGCTCAAAGCCGACATGGATCCT
LOC_Os06g34740
Target Sequence 
GAAGCTGTCAAAAAATAATGGCTGGAAAAGGCTCGATCAAGGGAATGAAAAGGAAATGCAAAGCTGTAAGCTCAAAGCCG
ACATGGATCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5009.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis