Browse Element(s) Details


OsAffx.5011.1.S1_at

Description tigr:9634.m03286
TID=OsAffx.5011.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3478011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34740OsAffx.5009.1.S1_at11/116+20190208..20191869NA
LOC_Os06g34750NANA6+20194559..20194865hypothetical protein
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified
LOC_Os06g34770NANA6+20209488..20209965hypothetical protein
LOC_Os06g34780OsAffx.5011.1.S1_at11/116+20212106..20214877expressed protein
LOC_Os06g34780Os.22962.2.A1_at1/116+20212106..20214877expressed protein
LOC_Os06g34790Os.22372.1.S1_at11/116+20222908..20223695expressed protein
LOC_Os06g34800OsAffx.27939.1.S1_at11/116+20224147..20224890hypothetical protein
LOC_Os06g34810OsAffx.27940.1.S1_at11/116+20229770..20230677hypothetical protein
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5011.1.S1_at--320--6891Chr06:20214704..20214728 (25 bp)
GTATACTGTGTTACGATCACCTCAT
LOC_Os06g34780
OsAffx.5011.1.S1_at--262--2671Chr06:20214618..20214642 (25 bp)
AAGCGGAAACGCACGAGCTGCAAAA
LOC_Os06g34780
OsAffx.5011.1.S1_at--823--9151Chr06:20214570..20214594 (25 bp)
TGCGCCTACTTGGAGCTCAATACGA
LOC_Os06g34780
OsAffx.5011.1.S1_at--474--1971Chr06:20213806..20213830 (25 bp)
ACTGTTTATACTCCATGCCTTCATG
LOC_Os06g34780
OsAffx.5011.1.S1_at--779--4311Chr06:20213789..20213813 (25 bp)
CCTTCATGGCACTGATCTGCAATGT
LOC_Os06g34780
OsAffx.5011.1.S1_at--420--2531Chr06:20212390..20212414 (25 bp)
AACTATGTGGGCTCATTTGAGACTG
LOC_Os06g34780
OsAffx.5011.1.S1_at--814--7491Chr06:20212360..20212384 (25 bp)
GTGGTGAGGACATCCCTATCATTGA
LOC_Os06g34780
OsAffx.5011.1.S1_at--328--5191Chr06:20212314..20212338 (25 bp)
GCAAGGACCAATTATTCGAGCTCAA
LOC_Os06g34780
OsAffx.5011.1.S1_at--33--1231Chr06:20212191..20212215 (25 bp)
AGTTCAGACAGCATGTCCGGTTCTA
LOC_Os06g34780
OsAffx.5011.1.S1_at--1095--7891Chr06:20212173..20212197 (25 bp)
GGTTCTACAGGCAATGGCAACTTCA
LOC_Os06g34780
OsAffx.5011.1.S1_at--26--3191Chr06:20212150..20212174 (25 bp)
CAATTGGTCATAACTCTTTACTTCA
LOC_Os06g34780
Target Sequence 
GTATACTGTGTTACGATCACCTCATATTGACAAGAAGTCCAGGGAGCAATTCTCGATGCATGTCAAGAAGCAATTTCTGG
TACAGAAAGCGGAAACGCACGAGCTGCAAAAGAAGCTGTTCTGGTTGAAGCGCCTGCGCCTACTTGGAGCTCAATACGAA
ATCCAAATCAGTTTCAAGACTCGTTTGGATAAGATGTTGGATCATGTGGACACTGTTTATACTCCATGCCTTCATGGCAC
TGATCTGCAATGTTTGATGTTGCCTAGAAAAATAAATAACTATGTGGGCTCATTTGAGACTGGGAATGTGGTGAGGACAT
CCCTATCATTGATACAACCATACCTAGTATACAGCAAGGACCAATTATTCGAGCTCAAGCACAACAACTCAATTATCAGG
AACATTGAACACAAACAAGGTGGGAGGAGGAGCAGCCATGAGAATGAACAAGTGAAAGCCAGCATGAGCAAGGGAAAGTT
CAGACAGCATGTCCGGTTCTACAGGCAATGGCAACTTCAATTGGTCATAACTCTTTACTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5011.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis