Browse Element(s) Details


Os.22372.1.S1_at

Description gb:AK063825.1
DB_XREF= gi:32973843
TID=Os.22372.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.22372 (NCBI UniGene Cluster)
UG_TITLE=Susceptibility homeodomain transciption factor (HDTF) mRNA, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-122-A08, full insert sequence.
FL= gb:AK063825.1 gb:AK122046.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3479011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34760NANA6+20202046..20208199retrotransposon protein, putative, unclassified
LOC_Os06g34770NANA6+20209488..20209965hypothetical protein
LOC_Os06g34780OsAffx.5011.1.S1_at11/116+20212106..20214877expressed protein
LOC_Os06g34780Os.22962.2.A1_at1/116+20212106..20214877expressed protein
LOC_Os06g34790Os.22372.1.S1_at11/116+20222908..20223695expressed protein
LOC_Os06g34800OsAffx.27939.1.S1_at11/116+20224147..20224890hypothetical protein
LOC_Os06g34810OsAffx.27940.1.S1_at11/116+20229770..20230677hypothetical protein
LOC_Os06g34820Os.35344.18.S1_x_at10/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820Os.35344.3.S1_x_at8/116+20235821..20241561Transposable element protein, putative, MuDR
LOC_Os06g34820OsAffx.22940.5.S1_x_at3/116+20235821..20241561Transposable element protein, putative, MuDR

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22372.1.S1_at--255--7871Chr06:20223433..20223457 (25 bp)
GGTTCGTGTGGCTCCGGCAGACCCA
LOC_Os06g34790
Os.22372.1.S1_at--520--8651Chr06:20223427..20223451 (25 bp)
TGTGGCTCCGGCAGACCCAGGCGGG
LOC_Os06g34790
Os.22372.1.S1_at--851--571Chr06:20223099..20223123 (25 bp)
ATCCAAGAAGACATGGGCGTTGCGT
LOC_Os06g34790
Os.22372.1.S1_at--381--2751Chr06:20223092..20223116 (25 bp)
AAGACATGGGCGTTGCGTTTTAGCA
LOC_Os06g34790
Os.22372.1.S1_at--873--5651Chr06:20223090..20223114 (25 bp)
GACATGGGCGTTGCGTTTTAGCAGC
LOC_Os06g34790
Os.22372.1.S1_at--984--4611Chr06:20223083..20223107 (25 bp)
GCGTTGCGTTTTAGCAGCGGTAAGT
LOC_Os06g34790
Os.22372.1.S1_at--884--8871Chr06:20223079..20223103 (25 bp)
TGCGTTTTAGCAGCGGTAAGTAAGT
LOC_Os06g34790
Os.22372.1.S1_at--616--6811Chr06:20223076..20223100 (25 bp)
GTTTTAGCAGCGGTAAGTAAGTAGT
LOC_Os06g34790
Os.22372.1.S1_at--997--1091Chr06:20223061..20223085 (25 bp)
AGTAAGTAGTGAGATCCGGGCCGTC
LOC_Os06g34790
Os.22372.1.S1_at--703--2331Chr06:20223028..20223052 (25 bp)
AAAGATTGTAGTTGTTGTTATATGC
LOC_Os06g34790
Os.22372.1.S1_at--587--6631Chr06:20223018..20223042 (25 bp)
GTTGTTGTTATATGCTTGGAATTCG
LOC_Os06g34790
Target Sequence 
GGTTCGTGTGGCTCCGGCAGACCCAGGCGGGCGGCGCCACCCACACGTTCGACACCATCGGGAAGCAGGTGTGGTACGCG
GGCGAGGTGACGGCGTTCGTGGAGCAGGGGCGGATGCACGGCGTCGCCGGGGTGAAGAGCAAGGAGCTCCTCATCTGGGT
CTCCATCTCCGAGATCGTCCTCAGCCCCTCCGGCACCAAGCTCGTCTTCCGCACCCCGGCCGGCCTCGGCCGCGCCCTCC
CCGTCACCGCCTTCCAGCTCAACCCGGCGCCCCCGGAGCCGGAGAAGAAGGACGCCGCCGCCGCCGACGAGGCCGACGCC
GCCGCCACCAACTGATCCAAGAAGACATGGGCGTTGCGTTTTAGCAGCGGTAAGTAAGTAGTGAGATCCGGGCCGTCGTG
GTGAAAAAGATTGTAGTTGTTGTTATATGCTTGGAATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22372.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis