Browse Element(s) Details


Os.22962.2.A1_at

Description gb:AK111605.1
DB_XREF= gi:37988268
TID=Os.22962.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.22962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098N07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098N07, full insert sequence.
FL= gb:AK111605.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3324011/11Mitochondrial ribosomal protein S10, putative, expressed
LOC_Os06g347801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed
LOC_Os12g33240Os.22962.2.A1_at11/1112+20077167..20079451Mitochondrial ribosomal protein S10, putative, expressed
LOC_Os12g33250NANA12+20089739..20090221transposon protein, putative, unclassified
LOC_Os12g33260NANA12+20092975..20095625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33270NANA12+20096706..20099748hypothetical protein
LOC_Os12g33280NANA12+20100110..20104904retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005739cellular_componentmitochondrion
GO:0005763cellular_componentmitochondrial small ribosomal subunit
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.22962.2.A1_at--984--2431Chr12:20078596..20078620 (25 bp)
AAAAGTTCCTCAGCTGTGGAGCCAT
LOC_Os12g33240
Os.22962.2.A1_at--893--8451Chr12:20078620..20078644 (25 bp)
TGGCCGCCAAGATACGCATAGTGAT
LOC_Os12g33240
Os.22962.2.A1_at--305--9231Chr12:20078724..20078748 (25 bp)
TCCTTGTATACCGTGCTACGATCGC
LOC_Os12g33240
Os.22962.2.A1_at--158--9951Chr12:20078740..20078764 (25 bp)
TACGATCGCCTCACATAGACAAGAA
LOC_Os12g33240
Os.22962.2.A1_at--843--4551Chr12:20078864..20078888 (25 bp)
GCGCCTGCTTGGTGCTCAGTATGAA
LOC_Os12g33240
Os.22962.2.A1_at--1006--3791Chr12:20078889..20078913 (25 bp)
CTCCAGATCAGTTTCAAGACCCGTT
LOC_Os12g33240
Os.22962.2.A1_at--219--2752Chr12:20078919..20078943 (25 bp)
AAGAAGCTGCTCCAAGCTGCTTTGT
LOC_Os12g33240
Os.22962.2.A1_at--888--10251Chr12:20078939..20078963 (25 bp)
TTTGTCGTCAGGTTGCTAGAGCACT
LOC_Os12g33240
Os.22962.2.A1_at--195--2771Chr12:20078990..20079014 (25 bp)
AAGACTGCTTTTGCTTCTATGATGT
LOC_Os12g33240
Os.22962.2.A1_at--454--7091Chr12:20079030..20079054 (25 bp)
GTCAAACAGTACTTGCATCCATTAA
LOC_Os12g33240
Os.22962.2.A1_at--560--5531Chr12:20079162..20079186 (25 bp)
GAAACAGATATCCTTCCGTTTCCGG
LOC_Os12g33240
Target Sequence 
AAAAGTTCCTCAGCTGTGGAGCCATGGCCGCCAAGATACGCATAGTGATGAAATCTTTTATGAGCCAAGCTAACAAAGTT
GAAGGGGTTATTCCATACGCGCAGAAGGTTGGATTGCCTGAATCACGATCCTTGTATACCGTGCTACGATCGCCTCACAT
AGACAAGAAGTCGAGGGAGCAGTTCTCGATGCATGTCAAGAAACAATTTCTGGTACAGAAGGCGGAGACGCACGAGCTGC
AGAAGAAGCTGTTCTGGTTGAAGCGCCTGCGCCTGCTTGGTGCTCAGTATGAACTCCAGATCAGTTTCAAGACCCGTTTG
GACAAGAAGCTGCTCCAAGCTGCTTTGTCGTCAGGTTGCTAGAGCACTTCACTTACCACCATTCACCCTTGAACAAGACT
GCTTTTGCTTCTATGATGTCTTCATGATGAGATTGTCAAACAGTACTTGCATCCATTAAGCATTTCATATGATGAAACTA
CACCATTTGGAAGAGTTTGAAGGAATGTAGTAGTAATCCATCCAAAACGTTCAGATGCTCTGAATTATGAAGATGTGGCA
TGATATGAAACAGATATCCTTCCGTTTCCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.22962.2.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis