Browse Element(s) Details


OsAffx.32002.1.S1_at

Description tigr:9640.m03234
TID=OsAffx.32002.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3322011/11F-box domain containing protein
LOC_Os12g342201/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed
LOC_Os12g33240Os.22962.2.A1_at11/1112+20077167..20079451Mitochondrial ribosomal protein S10, putative, expressed
LOC_Os12g33250NANA12+20089739..20090221transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32002.1.S1_at--573--2431Chr12:20066129..20066153 (25 bp)
AAAAGCATCTCTCTTCAGCTTGAGC
LOC_Os12g33220
OsAffx.32002.1.S1_at--110--4471Chr12:20066152..20066176 (25 bp)
GCCTGTTGTCGGTGTAGGACCTCAA
LOC_Os12g33220
OsAffx.32002.1.S1_at--191--8811Chr12:20066251..20066275 (25 bp)
TGTTGAGCTCGCAGTGTATTCCCGT
LOC_Os12g33220
OsAffx.32002.1.S1_at--915--7111Chr12:20066332..20066356 (25 bp)
GTCTTGCCCAATTCGTGAACTTGTT
LOC_Os12g33220
OsAffx.32002.1.S1_at--199--5491Chr12:20066348..20066372 (25 bp)
GAACTTGTTCTGTGTGGTGCCAATA
LOC_Os12g33220
OsAffx.32002.1.S1_at--445--611Chr12:20066465..20066489 (25 bp)
ATGCGCTTGCTTGCCAATAGTTCAT
LOC_Os12g33220
OsAffx.32002.1.S1_at--751--51Chr12:20066506..20066530 (25 bp)
ATTGCAGGATTGTCGCGGTTTTACC
LOC_Os12g33220
OsAffx.32002.1.S1_at--799--6572Chr12:20066570..20066594 (25 bp)
GATTCTCTGATTGTTCAAGGCTGTC
LOC_Os12g33220
OsAffx.32002.1.S1_at--947--2931Chr12:20066586..20066610 (25 bp)
AAGGCTGTCGCGTTTCTTGGAAAGC
LOC_Os12g33220
OsAffx.32002.1.S1_at--513--8332Chr12:20066620..20066644 (25 bp)
GGCTGCCAAATCTGTTCGCTATGAT
LOC_Os12g33220
OsAffx.32002.1.S1_at--575--4871Chr12:20066637..20066661 (25 bp)
GCTATGATCGTAATTGCCCGGTCTA
LOC_Os12g33220
Target Sequence 
AAAAGCATCTCTCTTCAGCTTGAGCCTGTTGTCGGTGTAGGACCTCAAGGTAGAGTTTTCAGGATGCCATTGACTGATGT
AAGCCTCAAGGCTCTAGCCCTCGGGTGCCGTATGCTTCAGATTGTTGAGCTCGCAGTGTATTCCCGTCACACTTCTTATC
CAGAAATTGGCTTCAGTCAAGAGGGCCTTGCGACGCTCTTCCAGTCTTGCCCAATTCGTGAACTTGTTCTGTGTGGTGCC
AATATCTTCGATGATGAGGTGATGAAGGCCCTCTCATCTGCACAATTCCTGGAGACTCTCAAGCTTATGGATTGCAAACG
GATAACTGATGCCGGGATGCGCTTGCTTGCCAATAGTTCATCTTTGGTTAACCTCACATTGCAGGATTGTCGCGGTTTTA
CCGATGATGGAGTCAGTGAGGTCGTACGTGCACGGAATTTGGATTCTCTGATTGTTCAAGGCTGTCGCGTTTCTTGGAAA
GCTGTGAAGGGGGCTGCCAAATCTGTTCGCTATGATCGTAATTGCCCGGTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32002.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis