Browse Element(s) Details


Os.50509.1.S2_at

Description gb:AK101082.1
DB_XREF= gi:32986291
TID=Os.50509.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024E24, full insert sequence.
FL= gb:AK101082.1 gb:AK121521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3321011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed
LOC_Os12g33240Os.22962.2.A1_at11/1112+20077167..20079451Mitochondrial ribosomal protein S10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0004842molecular_functionubiquitin-protein ligase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50509.1.S2_at--720--3891Chr12:20058742..20058766 (25 bp)
CTGTGGATCCAGTCCTATGAGATGA
LOC_Os12g33210
Os.50509.1.S2_at--792--5011Chr12:20058767..20058791 (25 bp)
GCAGGTTTTCAGTCAGTTTTGATCT
LOC_Os12g33210
Os.50509.1.S2_at--148--6812Chr12:20058782..20058806 (25 bp)
GTTTTGATCTGAACATTCCTGCATT
LOC_Os12g33210
Os.50509.1.S2_at--33--5171Chr12:20058813..20058833 (21 bp)
GCAAGCAGATATTCTCGCAGGCGGA
LOC_Os12g33210
Os.50509.1.S2_at--354--2131Chr12:20059143..20059167 (25 bp)
ACAGTGGGACTACTATACTGCCCCT
LOC_Os12g33210
Os.50509.1.S2_at--662--2712Chr12:20059249..20059273 (25 bp)
AAGCATGCAGGTTAAGCCACGTCAT
LOC_Os12g33210
Os.50509.1.S2_at--601--3091Chr12:20059282..20059306 (25 bp)
AATAGCCGTCGGATCACGTGTATCT
LOC_Os12g33210
Os.50509.1.S2_at--308--3351Chr12:20059296..20059320 (25 bp)
CACGTGTATCTTTCTTTGTTGTTGT
LOC_Os12g33210
Os.50509.1.S2_at--164--8871Chr12:20059414..20059438 (25 bp)
TGAGTGCTCCTAGTCATGCATGCAT
LOC_Os12g33210
Os.50509.1.S2_at--919--211Chr12:20059444..20059468 (25 bp)
ATATTAAGCCACTTCTATGTCCCTT
LOC_Os12g33210
Os.50509.1.S2_at--357--451Chr12:20059473..20059497 (25 bp)
ATCTACTACCCAAATGCCAACTTTA
LOC_Os12g33210
Target Sequence 
CTGTGGATCCAGTCCTATGAGATGAGCAGGTTTTCAGTCAGTTTTGATCTGAACATTCCTGCATTTGAGGAGCAAGCAGA
TATTCTCGCAGGCGGAGAGTGAAGCAATGTCGTGTACAAGGGATATCTGTTGATGTAAGCTCAAGAAAAACGAAGAATTG
TGAGCTATAAAAAGATTGGAATTGATTGAACAGTGGGACTACTATACTGCCCCTTNCAGAGGGTCTGGTGTGAACAAAAA
CTCATCNCTTCTTCCTATATAGTTGGTACCTACTACAAGTATTAACACTNTAAAGAAGCATGCAGGTTAAGCCACGTCAT
CGNTAACCAATAGCCGTCGGATCACGTGTATCTTTCTTTGTTGTTGTTTAGCTGGAATTCATTCATTCGTTCAATGGNCA
TGCAGGCTGTAAGTAAGCAAAATGCCATTGGTAATTAAACACATCAATGGATGACTCACTTGAGTGCTCCTAGTCATGCA
TGCATCCCCCATATTAAGCCACTTCTATGTCCCTTGGCCATCTACTACCCAAATGCCAACTTTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50509.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis