Browse Element(s) Details


Os.50509.1.S1_at

Description gb:AK121521.1
DB_XREF= gi:37991144
TID=Os.50509.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50509 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024E24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033028J24, full insert sequence.
FL= gb:AK101082.1 gb:AK121521.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3321011/11F-box domain containing protein, expressed
LOC_Os12g342201/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed
LOC_Os12g33240Os.22962.2.A1_at11/1112+20077167..20079451Mitochondrial ribosomal protein S10, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50509.1.S1_at--307--7412Chr12:20057925..20057949 (25 bp)
GTGATCTTGTGCTATGTGGCGCCAA
LOC_Os12g33210
Os.50509.1.S1_at--24--3171Chr12:20057991..20058015 (25 bp)
AATTCCTGCAGACGCTCTAGCTTAT
LOC_Os12g33210
Os.50509.1.S1_at--972--771Chr12:20058044..20058068 (25 bp)
ATGTGCTTGCTTGCAGATAGCCCAT
LOC_Os12g33210
Os.50509.1.S1_at--283--8571Chr12:20058072..20058096 (25 bp)
TGGTTAACCTTACACTGCGGCAATC
LOC_Os12g33210
Os.50509.1.S1_at--192--9131Chr12:20058087..20058111 (25 bp)
TGCGGCAATCTGACGGTTTTTCTGA
LOC_Os12g33210
Os.50509.1.S1_at--33--5731Chr12:20058202..20058226 (25 bp)
GACTGCCAAATCTATTCGCTATGAA
LOC_Os12g33210
Os.50509.1.S1_at--130--10612Chr12:20058272..20058296 (25 bp)
TTCGGGCAGGATTGAGTCCCCTCAA
LOC_Os12g33210
Os.50509.1.S1_at--82--7252Chr12:20058287..20058311 (25 bp)
GTCCCCTCAAGATCTTCAGTTGTTT
LOC_Os12g33210
Os.50509.1.S1_at--235--8951Chr12:20058341..20058365 (25 bp)
TGACGGCTGCTGTTTTCATTTTTCA
LOC_Os12g33210
Os.50509.1.S1_at--794--231Chr12:20058365..20058389 (25 bp)
ATATTTCTGGACCTGCTTTTGGTGA
LOC_Os12g33210
Os.50509.1.S1_at--190--7851Chr12:20058477..20058501 (25 bp)
GGTACCCTGCAACCAGTGATTTACT
LOC_Os12g33210
Target Sequence 
GTGATCTTGTGCTATGTGGCGCCAATATCTTTGATGATGAGGGGATGAAGGCCCTCTCATCTGCACAATTCCTGCAGACG
CTCTAGCTTATGGATTGCGTATATATAACTGATGCTGGGATGTGCTTGCTTGCAGATAGCCCATCTTTGGTTAACCTTAC
ACTGCGGCAATCTGACGGTTTTTCTGATGTTGGAGTTGGTGAGGTTGTACGTGCACGGAAATTGGATTCTCTGATTGTTG
AAGGTTGTAGCAGGGTATCTCAGAAAGCTGTTCTGGGGACTGCCAAATCTATTCGCTATGAACGATATTATCCTGGTTAT
GGGAAGCTAAGAAGATCAAGCTTGAGCTTCGGGCAGGATTGAGTCCCCTCAAGATCTTCAGTTGTTTTTTGGACCCCCTG
TTGAAGTGCACAGCATTGACGGCTGCTGTTTTCATTTTTCATATTTCTGGACCTGCTTTTGGTGATTGTCTGTCAGTCGG
TTATATTAGCTTGTAATAGTGATTTTTATAAGGCATCTGATGTGTGAAAACCATGGTAATGGTCAACACAATGGTACCCT
GCAACCAGTGATTTACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis