Browse Element(s) Details


Os.40053.1.A1_at

Description gb:CB672269
DB_XREF= gi:29675994
DB_XREF=OSJNEe06D14.r
CLONE=OSJNEe06D14
TID=Os.40053.1
CNT=4
FEA=EST
TIER=ConsEnd
STK=2
UG=Os.40053 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_198138.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3318011/11expressed protein
LOC_Os12g367406/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33140OsAffx.32001.1.S1_at11/1112+20023809..20024456hypothetical protein
LOC_Os12g33150NANA12+20029724..20030981expressed protein
LOC_Os12g33160Os.38756.1.S1_s_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S1_at11/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.1.S2_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.3.S1_x_at10/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.28429.2.S1_at8/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33160Os.39045.1.S1_x_at1/1112+20033006..20038366NB-ARC domain containing protein, expressed
LOC_Os12g33170Os.40855.2.S1_x_at10/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_x_at4/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40855.4.S1_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33170Os.40360.1.S1_x_at1/1112+20045351..20046727hypothetical protein
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.40053.1.A1_at--808--10452Chr12:22476097..22476121 (25 bp)
TTACATTTAAATACAAGAGGTCCTT
LOC_Os12g36740
Os.40053.1.A1_at--479--9852Chr12:22476108..22476132 (25 bp)
TACAAGAGGTCCTTATATATCTTGC
LOC_Os12g36740
Os.40053.1.A1_at--73--7932Chr12:22476145..22476169 (25 bp)
GGTTGGCTCTTTGACATTGGAGCTG
LOC_Os12g36740
Os.40053.1.A1_at--456--3612Chr12:20049729..20049753 (25 bp)
CATTGGAGCTGGGATTCGTGAACGA
LOC_Os12g33180
Os.40053.1.A1_at--113--1611Chr12:20049735..20049759 (25 bp)
AGCTGGGATTCGTGAACGAGTGACA
LOC_Os12g33180
Os.40053.1.A1_at--1026--3891Chr12:20049737..20049761 (25 bp)
CTGGGATTCGTGAACGAGTGACAAC
LOC_Os12g33180
Os.40053.1.A1_at--721--7671Chr12:20049739..20049763 (25 bp)
GGGATTCGTGAACGAGTGACAACAT
LOC_Os12g33180
Os.40053.1.A1_at--882--91Chr12:20049742..20049766 (25 bp)
ATTCGTGAACGAGTGACAACATGGT
LOC_Os12g33180
Os.40053.1.A1_at--62--9431Chr12:20049744..20049768 (25 bp)
TCGTGAACGAGTGACAACATGGTGG
LOC_Os12g33180
Os.40053.1.A1_at--18--2512Chr12:22476189..22476213 (25 bp)
AACATGGTGGATTGGCTTGCTGGTT
LOC_Os12g36740
Os.40053.1.A1_at--660--10712Chr12:22476205..22476229 (25 bp)
TTGCTGGTTGGCTTGTTGGTTGATT
LOC_Os12g36740
Target Sequence 
TTACATTTAAATACAAGAGGTCCTTATATATCTTGCNGCCTGTTTCTNGGGTTGGCTCTTTGACATTGGAGCTGGGATTC
GTGAACGAGTGACAACATGGTGGATTGGCTTGCTGGTTGGCTTGTTGGTTGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.40053.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis