Browse Element(s) Details


Os.23764.1.S1_at

Description gb:AK073020.1
DB_XREF= gi:32983043
TID=Os.23764.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23764 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023149K21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023149K21, full insert sequence.
FL= gb:AK073020.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3323011/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g33180Os.40053.1.A1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.2.S1_at11/1112+20047867..20050592expressed protein
LOC_Os12g33180OsAffx.19992.1.S1_s_at7/1112+20047867..20050592expressed protein
LOC_Os12g33194Os.48076.1.S1_at5/1112+20052043..20054979expressed protein
LOC_Os12g33210Os.50509.1.S1_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33210Os.50509.1.S2_at11/1112+20055654..20059554F-box domain containing protein, expressed
LOC_Os12g33220OsAffx.32002.1.S1_at11/1112+20065256..20066704F-box domain containing protein
LOC_Os12g33230Os.23764.1.S1_at11/1112+20071739..20074694F-box domain containing protein, expressed
LOC_Os12g33240Os.22962.2.A1_at11/1112+20077167..20079451Mitochondrial ribosomal protein S10, putative, expressed
LOC_Os12g33250NANA12+20089739..20090221transposon protein, putative, unclassified
LOC_Os12g33260NANA12+20092975..20095625retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g33270NANA12+20096706..20099748hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0009723biological_processresponse to ethylene stimulus
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0005634cellular_componentnucleus
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23764.1.S1_at--662--4171Chr12:20074030..20074054 (25 bp)
CGCCAAATCCGTTCACTACAAAGTT
LOC_Os12g33230
Os.23764.1.S1_at--978--71Chr12:20074056..20074080 (25 bp)
ATTGCCCAAGCTACTACGATCGATA
LOC_Os12g33230
Os.23764.1.S1_at--1131--8611Chr12:20074260..20074284 (25 bp)
TGGGATCATTTACTGCAACTGTGCT
LOC_Os12g33230
Os.23764.1.S1_at--52--4891Chr12:20074352..20074376 (25 bp)
GCTTTGGGAGTGTCTGCAACTATCA
LOC_Os12g33230
Os.23764.1.S1_at--916--371Chr12:20074373..20074397 (25 bp)
ATCAACTCTTTTGTCGACGAAGCGC
LOC_Os12g33230
Os.23764.1.S1_at--673--8511Chr12:20074414..20074438 (25 bp)
TGGAACTACTGCCAATCGTCTCAGA
LOC_Os12g33230
Os.23764.1.S1_at--63--4031Chr12:20074430..20074454 (25 bp)
CGTCTCAGACTTTCAACATTTTCCT
LOC_Os12g33230
Os.23764.1.S1_at--734--8671Chr12:20074457..20074481 (25 bp)
TGTGTATGCCACCTTCATTGTTATG
LOC_Os12g33230
Os.23764.1.S1_at--937--3711Chr12:20074566..20074590 (25 bp)
CTACTCTAACCTCTGTGAACTGATC
LOC_Os12g33230
Os.23764.1.S1_at--274--8831Chr12:20074586..20074610 (25 bp)
TGATCTTTTCGCTTCCTACAAAACT
LOC_Os12g33230
Os.23764.1.S1_at--829--7031Chr12:20074650..20074674 (25 bp)
GTACACTGCATTACCTGCTTATAGT
LOC_Os12g33230
Target Sequence 
CGCCAAATCCGTTCACTACAAAGTTGATTGCCCAAGCTACTACGATCGATATAAAGATTAGGTACTACGTGTGATGAGTG
AAAACTGGGATCATTTACTGCAACTGTGCTGTATACCATATTATATGATCTTGCCAATAACAATCTCAATTTGGCCTGTA
AGCAGTACTACTGTTTAGCTTTGGGAGTGTCTGCAACTATCAACTCTTTTGTCGACGAAGCGCTACAGAAAGGTGGAAGT
GGAACTACTGCCAATCGTCTCAGACTTTCAACATTTTCCTTTTGTGTATGCCACCTTCATTGTTATGGCTTACAAGAAAC
GTTTCAGGATATAATTGTGCCTACATCTTTAACAGACGATTATATGTTTCTATCACGTTTTGTTTCTGTGCCTACTCTAA
CCTCTGTGAACTGATCTTTTCGCTTCCTACAAAACTGGTCCGAAAGGCATTGGATCATTGGGTGTAGTCAACAATGTACA
CTGCATTACCTGCTTATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23764.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis