Browse Element(s) Details


OsAffx.19992.1.S1_s_at

Description tigr:9640.m03560
TID=OsAffx.19992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g367407/11expressed protein
LOC_Os12g331807/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36700OsAffx.7811.1.S1_at10/1112+22448593..22449262hypothetical protein
LOC_Os12g36710OsAffx.7812.1.S1_at11/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.29932.2.S1_x_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36710Os.54071.1.S1_at1/1112+22450130..22451043hypothetical protein
LOC_Os12g36720Os.28429.3.S1_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.3.S1_x_at11/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36720Os.28429.1.S1_at9/1112+22455301..22458833NB-ARC domain containing protein, expressed
LOC_Os12g36730Os.28429.1.S1_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36730Os.28429.3.S1_x_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36740OsAffx.19992.2.S1_at9/1112+22474207..22477036expressed protein
LOC_Os12g36740OsAffx.19992.1.S1_s_at7/1112+22474207..22477036expressed protein
LOC_Os12g36740Os.40053.1.A1_at6/1112+22474207..22477036expressed protein
LOC_Os12g36750Os.48076.1.S1_at8/1112+22478221..22481232expressed protein
LOC_Os12g36760Os.49476.1.S1_at11/1112+22485421..22495669expressed protein
LOC_Os12g36770OsAffx.32058.1.S1_s_at11/1112+22496668..22501413Lipase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.19992.1.S1_s_at--551--4591NONE
GCGCAAGGACCGGAGTAGCTCAAGC
NONE
OsAffx.19992.1.S1_s_at--86--2931NONE
AAGGACCGGAGTAGCTCAAGCTCTT
NONE
OsAffx.19992.1.S1_s_at--323--8091NONE
GGACCGGAGTAGCTCAAGCTCTTAC
NONE
OsAffx.19992.1.S1_s_at--969--1752Chr12:22475302..22475665 (25 bp)
ACCGGAGTAGCTCAAGCTCTTACGA
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--645--8031NONE
GGAGTAGCTCAAGCTCTTACGACAG
NONE
OsAffx.19992.1.S1_s_at--1091--6952Chr12:22475647..22475671 (25 bp)
GTAGCTCAAGCTCTTACGACAGTGA
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--10--4832Chr12:22475650..22475674 (25 bp)
GCTCAAGCTCTTACGACAGTGAACA
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--1064--3232Chr12:22475653..22475677 (25 bp)
CAAGCTCTTACGACAGTGAACATGA
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--155--9552Chr12:22475658..22475682 (25 bp)
TCTTACGACAGTGAACATGAGGGCA
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--1072--9932Chr12:22475661..22475685 (25 bp)
TACGACAGTGAACATGAGGGCAAAT
LOC_Os12g36740
OsAffx.19992.1.S1_s_at--227--1212Chr12:22476394..22476418 (25 bp)
AGTTTCTTGGACGTGACAAGGATGA
LOC_Os12g36740
Target Sequence 
GCGCAAGGACCGGAGTAGCTCAAGCTCTTACGACAGTGAACATGAGGGCAAATCATGCAAGCACAAGAAGAGCAGATCAT
CAAGGAAGTCTAGGGAGAGGGAGCGAAGCAAGGATAGGCATTCTAAACGAGACAAGAGCAAACATAAAGAGTTTCTTGGA
CGTGACAAGGATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.19992.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis