Browse Element(s) Details


OsAffx.32058.1.S1_s_at

Description tigr:9640.m03563
TID=OsAffx.32058.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Lipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3677011/11Lipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36740OsAffx.19992.2.S1_at9/1112+22474207..22477036expressed protein
LOC_Os12g36740OsAffx.19992.1.S1_s_at7/1112+22474207..22477036expressed protein
LOC_Os12g36740Os.40053.1.A1_at6/1112+22474207..22477036expressed protein
LOC_Os12g36750Os.48076.1.S1_at8/1112+22478221..22481232expressed protein
LOC_Os12g36760Os.49476.1.S1_at11/1112+22485421..22495669expressed protein
LOC_Os12g36770OsAffx.32058.1.S1_s_at11/1112+22496668..22501413Lipase family protein, expressed
LOC_Os12g36780NANA12+22515213..22521028retrotransposon protein, putative, unclassified
LOC_Os12g36790NANA12+22521344..22524940retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32058.1.S1_s_at--146--4031Chr12:22497252..22497276 (25 bp)
CGTCATCGTCGAGCCAAAGTCAAGA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--531--7931Chr12:22497184..22497208 (25 bp)
GGATTGCCATCATCATCAGAGCCAA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--356--4031Chr12:22497131..22497155 (25 bp)
CGTTGCCTTGTATGAGACACCTCGA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--975--5631Chr12:22497116..22497140 (25 bp)
GACACCTCGACATCTTTACAGCAAG
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--967--91Chr12:22497091..22497115 (25 bp)
ATTCGCTTGGCGAGATCCATGATAA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--152--7651Chr12:22497066..22497090 (25 bp)
GGGAGCATTACATGCCCAAGTACAT
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--741--8851Chr12:22497024..22497048 (25 bp)
TGATCGACAAGCTCGTCGCCGAGGA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--1091--8111Chr12:22496996..22497020 (25 bp)
GGACGGCATCGATGACGACCACAGA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--960--6551Chr12:22496877..22496901 (25 bp)
GATTGCTAGTAGCTGTACCATAGTT
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--160--731Chr12:22496783..22496807 (25 bp)
ATGATTCGCTGTCATTTCCTTTTGA
LOC_Os12g36770
OsAffx.32058.1.S1_s_at--1149--10251Chr12:22496763..22496787 (25 bp)
TTTGACAGCGGCCATCACAGGAAGG
LOC_Os12g36770
Target Sequence 
CGTCATCGTCGAGCCAAAGTCAAGATCCCCCCCAGCTCTACCCTCCAGGAAGAATAATGCACATGGTTGGATTGCCATCA
TCATCAGAGCCAAACAGTACAAGTGAACAAGGTGAGGAGGTCGTTGCCTTGTATGAGACACCTCGACATCTTTACAGCAA
GATTCGCTTGGCGAGATCCATGATAAGGGAGCATTACATGCCCAAGTACATCAGGACAATGGAGCTGTTGATCGACAAGC
TCGTCGCCGAGGAGGAGGACGGCATCGATGACGACCACAGATTGGGATCATTGTAGCATTGGCTGGTGTACAGAATAATT
GTTGTTGTTATTGTTGTACAGATTATGGAAAAGAAAAAAGGCAGCATGGTTTTCAGATTGCTAGTAGCTGTACCATAGTT
CTGATGATTGTTTTCATGGTTTGTGGTTAGCATCCAGGAGGCTGTAAACTCCTGATAGATTGTGTTATGATGATTCGCTG
TCATTTCCTTTTGACAGCGGCCATCACAGGAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32058.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis