Browse Element(s) Details


Os.49476.1.S1_at

Description gb:AK104059.1
DB_XREF= gi:32989268
TID=Os.49476.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49476 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-024-F12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-024-F12, full insert sequence.
FL= gb:AK104059.1 gb:AK072345.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3676011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g36730Os.28429.1.S1_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36730Os.28429.3.S1_x_at6/1112+22465177..22468340NB-ARC domain containing protein
LOC_Os12g36740OsAffx.19992.2.S1_at9/1112+22474207..22477036expressed protein
LOC_Os12g36740OsAffx.19992.1.S1_s_at7/1112+22474207..22477036expressed protein
LOC_Os12g36740Os.40053.1.A1_at6/1112+22474207..22477036expressed protein
LOC_Os12g36750Os.48076.1.S1_at8/1112+22478221..22481232expressed protein
LOC_Os12g36760Os.49476.1.S1_at11/1112+22485421..22495669expressed protein
LOC_Os12g36770OsAffx.32058.1.S1_s_at11/1112+22496668..22501413Lipase family protein, expressed
LOC_Os12g36780NANA12+22515213..22521028retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49476.1.S1_at--828--8991Chr12:22486280..22486304 (25 bp)
TGAAGAACCCGGAGGATGCCTCTCT
LOC_Os12g36760
Os.49476.1.S1_at--1029--9171Chr12:22486101..22486288 (25 bp)
TGCCTCTCTGTTAGCCGACGAAATA
LOC_Os12g36760
Os.49476.1.S1_at--1036--311Chr12:22486079..22486103 (25 bp)
ATACTTTATCAAGTCGACGCCAACC
LOC_Os12g36760
Os.49476.1.S1_at--661--5811Chr12:22486064..22486088 (25 bp)
GACGCCAACCCACAGAACTGGATGG
LOC_Os12g36760
Os.49476.1.S1_at--294--3031Chr12:22486027..22486051 (25 bp)
AATGCGGTCACGTATCGCTGTCAAA
LOC_Os12g36760
Os.49476.1.S1_at--973--9591Chr12:22485713..22485737 (25 bp)
TCATACTGCATACCGGCTTGATCCA
LOC_Os12g36760
Os.49476.1.S1_at--1083--5971Chr12:22485642..22485666 (25 bp)
GAGAAATGCCACTTACACTGGTCGG
LOC_Os12g36760
Os.49476.1.S1_at--667--3331Chr12:22485627..22485651 (25 bp)
CACTGGTCGGCTTGAGATGTATCGC
LOC_Os12g36760
Os.49476.1.S1_at--205--10711Chr12:22485572..22485596 (25 bp)
TTGCCGAGACATTCTTTTGTGCAGA
LOC_Os12g36760
Os.49476.1.S1_at--425--6071Chr12:22485546..22485570 (25 bp)
GAGTTCTTTTTCGTCAGTAACATTC
LOC_Os12g36760
Os.49476.1.S1_at--619--5291Chr12:22485437..22485461 (25 bp)
GAAGTCTACCAGAATTCCGGCACAA
LOC_Os12g36760
Target Sequence 
TGAAGAACCCGGAGGATGCCTCTCTGTTAGCCGACGAAATACTTTATCAAGTCGACGCCAACCCACAGAACTGGATGGTT
GCTGGGAGGAAATGCGGTCACGTATCGCTGTCAAACAAACAAGGTTCAAGGATAGAGATCACGGTGACGTGCGTGCCGCT
GGTGTCCGGCTACGTCCATCCGCCGCAGCTGGGCCTGCCGCACGTCGGCGAGGCCAACATCANNTGNAACCCGGCAGGCC
CTCACCTGGNGTGNCGNCCTTCNTNCGACACTGAGCACCTCATACTGCATACCGGCTTGATCCATCCATCATACNCAGAT
TGTATGTTAGGCTTGTAGCCTGTAGTAGAAGAGAAATGCCACTTACACTGGTCGGCTTGAGATGTATCGCNCATTTGCAC
CGNGATGANGATGTATGCTGTTTTTGCCGAGACATTCTTTTGTGCAGATGAGTTCTTTTTCGTCAGTAACATTCAGANCG
TGTTCCATTGTTTCATGTNCCATAAGATAAGTAACATAATTCTCCGTGNANNTCAAATCAAGTGATAGNCTGGATTTTGA
AGTCTACCAGAATTCCGGCACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49476.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis